Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1650g00013 ATGGACAGTATTCTGGTTCTGGGTCTTCTCAAACTTCGTATTAAAAGAGGCATTAATCTCGCAATTCGAGATTCTCGTTCCAGTGACCCTTATATCGTTGTCAACATGGGCGAACAGAAGCTGAGGACTCATGTGGTGAAACAGAACTGCAATCCTGAGTGGAATGAAGAATTGACCCTTTCTATAAGGGATGTTAATACTCCTATACATCTGGTAATTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCAGAAATAGACTTAAAACCATATCTTGAGTGTGTAAAGATGGCGATGGAGTTGGAGAAACTCCCACATGGTTGTGCAGTAAAGAGGATTCAACCAAATAGGACTAACTGTCTTGCTGAAGAGAGTAGCTGCATTTTGCAAAATGGAAATATCATCCAAGACATGATTTTAAGATTGAGAAATGTTGAGCGTGGCGAAATAGTTGTGCAAATTGAGTGGATTGATGTTATAGGTTGCAAGGGCTTATCAGAGGTAGAATTTTAA 525 0.3962 MDSILVLGLLKLRIKRGINLAIRDSRSSDPYIVVNMGEQKLRTHVVKQNCNPEWNEELTLSIRDVNTPIHLVIYDKDTFSVDDKMGEAEIDLKPYLECVKMAMELEKLPHGCAVKRIQPNRTNCLAEESSCILQNGNIIQDMILRLRNVERGEIVVQIEWIDVIGCKGLSEVEF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1650g00013 174 CDD C2_ArfGAP 7 152 - -
Gabi1650g00013 174 Gene3D C2 domain 6 165 IPR035892 -
Gabi1650g00013 174 SMART C2_3c 9 104 IPR000008 -
Gabi1650g00013 174 Pfam C2 domain 9 94 IPR000008 -
Gabi1650g00013 174 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 161 IPR035892 -
Gabi1650g00013 174 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 7 166 IPR044562 -
Gabi1650g00013 174 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1650g00013 Gabi-Chr1650 135966 138410 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1650g00013 40 170 C2H2 Transcription Factor Family AT1G70790 62.595 2.36e-60 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1650g00013 - - gmx:100788395 285.034