Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1650g00012 ATGGACAGTATTCTGGTTCTGGGTCTTCTCAAACTTCGTATTAAAAGAGGCATTAATCTCGCAATTCGAGATTCTCGTTCCAGTGACCCTTATATCGTTGTCAACATGGGCGAACAGACAGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCAGAAATAGACTTAAAACCATATCTTGAGTGTGTAAAGATGGCGATGGAGTTGGAGAAACTCCCACATGGTTGTGCAGTAAAGAGGATTCAACCAAATAGGACTAACTGTCTTGCTGAAGAGAGTAGCTGCATTTTGCAAAATGGAAATATCATCCAAGACATGATTTTAAGATTGAGAAATGTTGAGCGTGGCGAAATAGTTGTGCAAATTGAGTGGATTGATGTTATAGGTTGCAAGGGCTTATCAGAGGTAGAATTTTAA 429 0.3963 MDSILVLGLLKLRIKRGINLAIRDSRSSDPYIVVNMGEQTVYDKDTFSVDDKMGEAEIDLKPYLECVKMAMELEKLPHGCAVKRIQPNRTNCLAEESSCILQNGNIIQDMILRLRNVERGEIVVQIEWIDVIGCKGLSEVEF 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1650g00012 142 Pfam C2 domain 9 39 IPR000008 -
Gabi1650g00012 142 Pfam C2 domain 40 62 IPR000008 -
Gabi1650g00012 142 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 130 IPR035892 -
Gabi1650g00012 142 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 7 40 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1650g00012 Gabi-Chr1650 135962 138415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1650g00012 40 138 C2H2 Transcription Factor Family AT1G70790 62.626 2.72e-43 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1650g00012 - - gmx:100788395 214.542