Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1650g00009 ATGTTGGCTTCCACTGTTCTAACACCTTCCAAGTTCAACCCTTCGCAATTCGTCCCACCAATCAGCGTCCCAGAAATTCAACGAAGAAGCAGATTGGTAATCTTTTCCAAATCAAATTCCAAACATGCTGTGCTTGCCAGGGTCAGTAGTAGTAATGGACGTGACGGTGCCGTTGATGCTACCTCACCTCCTGACATTGAGGCAGTAAGTAGTGCATCTTCTGATCTTGGTGATGGTTATGTGGCCTTGTTTGTTCGTATGTTAGGCCTAGATCATGATCCTTTAGATAGAGAACAAGCTATAACTACTCTCTGGAAATATTCACTTGGTGGAAAGAAGTGTATTGACACTATAATGCGGTTTCCTGGTTGTATTAATCTTATTGTGAACCTCCTTAGATCAGAGTCTAGTTCAGCGTGCGAGGCTGCTGCAGGTCTTCTACGATCACTATCTTCAGTCAATCTGTATAGGAATTCGGTAGCTAATAGTGGAGCAATAGAAGAGTTAAATAGATTGCTGAGGCAATCTTCCTTGGCTCCCGAGCTAAAGGAGCAGAGTATGAGTACACTCTGGAGTTTATCTGTTGATGAGAAGATCTGCATTAAAATTGCAAATAGTGATATTTTGTTGTTAACTATTAAGTACCTTGATGATGAGGATATAAAAGTGAAGGAAGCTGCAGGTGGCATTTTGGCAAATTTGGCATTGAACCGTGTTAACCACAACATCATGGTTGAAGCAGGTGTTATACCAAAATTGGCAAAGTTCTTAACGTCTAATTCGGAAGGATCTAAAGTTATTAGAAAGGAAGCAAGAAATGCATTGCTTGAACTTGTTAAGGATAAGTATTGTAGAATTCTTGTCATTGAGGAAGGTCTGGTTCCTGTGCCATTAATAGGTGCTGCAGCCTATAAGTCATTCACCCCAGGTTTACATCTGTGGCCCAAATTACCAGATGGTACAGAAATTGAAAGGACTTCTACACAACCTTCCAGATTTGGTGCATCAGAATTACTTCTGGGATTAAATATCGATGACAAGAATGCTAACATAGAGGAAGCAAAAATCAATGCAATTGTTGGGCGGACACAACAGCAGTTCCTTGCTCGTATTGGGGCTATAGAAACGGAGGAGAAAACAATACCTCATTCTGAAAGCTCAAATGATCAGCGGCTTACACTTTTACCTTTGGTGGATGGTGTTGCTCGTTTAGTACTGATACTAGAACTAGAAGATAAGTCTGCGATATTAAGGGCTGCAGAGTCAATTGCTAATGCATGTATCAATGAACAAATGCGTATTGCATTCAAGGAGGCTGGAGCAATTAAGCATTTAGTACGGCTTTTGAATTGTGATGATAATGCGGTCCAGTTGGTGGTTATACAAGCTTTGGAAAGGCTCTCTGCTAGCAATGTTGTTTGCCGGGTAATTGAAGCTGAGGGTGTTTTAGGTCCTTTGGTTGGTATTTTGAAATGCTCAAAGATACCTGGAACTATTGTGGAAACGTCTTTGAACATACTTGCTCGGATATTAGACCCTAGTAAAGAGATGCAATTGAAGTTTTATGATGGACCAGTTAATGGACCTGAGGAGACGTTTGATGGAGCTAAAAATGATGGTGTTTCAAAAACAAACACCAGGAATGATATAATGGATTCTGTTTTCATAGCACACCTTGTTGAGATTTTGAAGTCCTCTTCACCCAGTTTACAAGAAAAGGCTGCATCTGTGCTCGAATTCGTGGCATTGACTGACCTGACTCTGGCCCCAATTATATCTGTGGATATTGAATCTGGTCTCAATTCTGTTTTTCAGCAAAAAATTTTGAAAATTTCAGCGGACATGGAATCTGATGTAGAAGATCAGTTCTCAGAAGCATATGCAATCGAATTCGAAGAAGCTGGTCGTGCAATATCTGCAGCATCCCGGTTAATGACAAGACTACTCGACTGTGAGCAGTTTTGCCACAAAATAAACTCCTCCCATTTCATTGGGTTGCTTCGTGAAATCCTCAGGTCCAATATTCCTCTCCACAACAAAGATTGGGTAGCTGCTTGCCTAGTTAAACTAAGTTCTCTCTATGGTAACAACATGGGTTTTAATCCAATCAATGTGGAAGTTACACTTTATGAGACAATCCCAAGACTAGTAGAACAGATCAAAACTTCATTCTCTCCAGAAGCACAGGAAACTGCTGTTGTAGAACTTAATAGAATAATATCTGAAGGAGTGGTGGATTCCTCAGGAGCTATTATTTCTGGGGGTGCAATATATCCATTGGTGAAGCTGATTGAAGAAGGAAGTGAAAAGGGTGTTGAAGCAAGCTTGGCAATATTGTATAATCTGAGTATGGACAGTGAGAACCATTCAGCACTTGTGGCTGCTGGAGCAGTCCCTGCCTTGCGGAGAATTGTTCTATCACACAGACCACAGTGGGAACGGGCACTTCATTTACTCAGGAGTTTGCAAACATGA 2475 0.4105 MLASTVLTPSKFNPSQFVPPISVPEIQRRSRLVIFSKSNSKHAVLARVSSSNGRDGAVDATSPPDIEAVSSASSDLGDGYVALFVRMLGLDHDPLDREQAITTLWKYSLGGKKCIDTIMRFPGCINLIVNLLRSESSSACEAAAGLLRSLSSVNLYRNSVANSGAIEELNRLLRQSSLAPELKEQSMSTLWSLSVDEKICIKIANSDILLLTIKYLDDEDIKVKEAAGGILANLALNRVNHNIMVEAGVIPKLAKFLTSNSEGSKVIRKEARNALLELVKDKYCRILVIEEGLVPVPLIGAAAYKSFTPGLHLWPKLPDGTEIERTSTQPSRFGASELLLGLNIDDKNANIEEAKINAIVGRTQQQFLARIGAIETEEKTIPHSESSNDQRLTLLPLVDGVARLVLILELEDKSAILRAAESIANACINEQMRIAFKEAGAIKHLVRLLNCDDNAVQLVVIQALERLSASNVVCRVIEAEGVLGPLVGILKCSKIPGTIVETSLNILARILDPSKEMQLKFYDGPVNGPEETFDGAKNDGVSKTNTRNDIMDSVFIAHLVEILKSSSPSLQEKAASVLEFVALTDLTLAPIISVDIESGLNSVFQQKILKISADMESDVEDQFSEAYAIEFEEAGRAISAASRLMTRLLDCEQFCHKINSSHFIGLLREILRSNIPLHNKDWVAACLVKLSSLYGNNMGFNPINVEVTLYETIPRLVEQIKTSFSPEAQETAVVELNRIISEGVVDSSGAIISGGAIYPLVKLIEEGSEKGVEASLAILYNLSMDSENHSALVAAGAVPALRRIVLSHRPQWERALHLLRSLQT 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1650g00009 824 SMART arm_5 744 784 IPR000225 GO:0005515
Gabi1650g00009 824 SMART arm_5 153 195 IPR000225 GO:0005515
Gabi1650g00009 824 SMART arm_5 543 583 IPR000225 GO:0005515
Gabi1650g00009 824 SMART arm_5 111 152 IPR000225 GO:0005515
Gabi1650g00009 824 SMART arm_5 785 824 IPR000225 GO:0005515
Gabi1650g00009 824 SMART arm_5 196 236 IPR000225 GO:0005515
Gabi1650g00009 824 SMART arm_5 237 280 IPR000225 GO:0005515
Gabi1650g00009 824 SMART arm_5 429 469 IPR000225 GO:0005515
Gabi1650g00009 824 Gene3D - 369 593 IPR011989 -
Gabi1650g00009 824 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 755 797 IPR000225 GO:0005515
Gabi1650g00009 824 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 123 165 IPR000225 GO:0005515
Gabi1650g00009 824 SUPERFAMILY ARM repeat 84 300 IPR016024 -
Gabi1650g00009 824 Gene3D - 607 824 IPR011989 -
Gabi1650g00009 824 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 37 824 - -
Gabi1650g00009 824 SUPERFAMILY ARM repeat 395 808 IPR016024 -
Gabi1650g00009 824 Gene3D - 68 306 IPR011989 -
Gabi1650g00009 824 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 164 197 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1650g00009 Gabi-Chr1650 69034 74823 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1650g00009 79 309 U-box Gene Family AT2G23140 30.638 1.21e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1650g00009 - - gmx:100793128 1267.29