Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1650g00004 ATGACCAAACCCAGCACTTTTTTTCAAAATATCATAAAGCCCTTCAAATTCGGTTCCAATAGAGAGGGAAATAGTGACGAAGATATACAGAACATAGCTGCACAGGAGCAAAAGATCTTCTCCTATGAAACATTGGTTGCCGCTACCAAGAACTTTCATAGTCTTAACAAGTTAGGTGAGGGAGGCTTTGGACCTGTCTACAAGGGTAAGTTGAATGATGGGAGAGAGATTGCAGTGAAGAAGTTATCACATAGCTCTAATCAAGGGAAGACACAGTTCACTAACGAGGCCAAGTTGTTGAGTCGTGTGCAGCACCGTAATGTGGTGAATTTGTTTGGTTATTGTACCCATGGCTCGGAGAAGCTTCTTGTTTATGAGTATGTCCCTCGTGAGAGCCTTGACAAGCTTCTATTCAGATCAAACAAGCGGGAGCAGTTAGATTGGAAACGTAGGTTTGACATAATAACTGGGGTGGCGAGGGGGTTACTTTATCTTCACGAAGACTCTCACAATTGCATCATCCACCGTGACATAAAAGCAAGTAACATTTTACTCGATGACAAATGGGTACCCAAAATTGCAGACTTTGGCTTGGCTCGTCTCTTCCCCGAAGATCAAACCCATGTCAATACACGTGTTGCCGGCACCAATGGGTATATGGCTCCGGAATATTTGATGCATGGACATCTATCTGTGAAGGCAGACGTGTTTAGCTATGGGGTTTTAGTGTTGGAATTGATCAGTGGCCATCGAAACTCGTCGTTTGATTTGGACGTGAATGCACGCAATCTACTTGACTGGGCATATAAGCTTTACAAGAAAGGGAGGGGCTTAGAAATCGTAGACCCTACATTGGCATCTTCTGTGGTGACCGAACAAGTAGAAATGTGTATACAACTGGGTCTGCTATGCACTCAAGGTGATCTTCAGCTACGTCCAACAATGGGGCGAGTGGTGGTGATGCTATCAAAGAAGCCAGGCCATATGGAAGAACCAACAAGACCAGGATTACCTGGTTCCAGATATAGAAGAATACCTCGCAGGCCTTTTGCTACGTCTTCCACTGCTGATGACTCTGATTCAGAAACTTTTGAATCAAGCAATTACGGCACTACCATTTCTGCTACAGGAACTAGCTCGGCTACTACAGAAGTAGACCCGCGAGGGAAACGTCCAATTCAAGGTTAG 1188 0.4461 MTKPSTFFQNIIKPFKFGSNREGNSDEDIQNIAAQEQKIFSYETLVAATKNFHSLNKLGEGGFGPVYKGKLNDGREIAVKKLSHSSNQGKTQFTNEAKLLSRVQHRNVVNLFGYCTHGSEKLLVYEYVPRESLDKLLFRSNKREQLDWKRRFDIITGVARGLLYLHEDSHNCIIHRDIKASNILLDDKWVPKIADFGLARLFPEDQTHVNTRVAGTNGYMAPEYLMHGHLSVKADVFSYGVLVLELISGHRNSSFDLDVNARNLLDWAYKLYKKGRGLEIVDPTLASSVVTEQVEMCIQLGLLCTQGDLQLRPTMGRVVVMLSKKPGHMEEPTRPGLPGSRYRRIPRRPFATSSTADDSDSETFESSNYGTTISATGTSSATTEVDPRGKRPIQG 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1650g00004 395 ProSiteProfiles Protein kinase domain profile. 52 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1650g00004 395 Gene3D Phosphorylase Kinase; domain 1 16 127 - -
Gabi1650g00004 395 SMART serkin_6 52 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1650g00004 395 SUPERFAMILY Protein kinase-like (PK-like) 37 352 IPR011009 -
Gabi1650g00004 395 MobiDBLite consensus disorder prediction 326 395 - -
Gabi1650g00004 395 MobiDBLite consensus disorder prediction 352 385 - -
Gabi1650g00004 395 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Gabi1650g00004 395 CDD STKc_IRAK 58 324 - -
Gabi1650g00004 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Gabi1650g00004 395 FunFam Cysteine-rich receptor-like protein kinase 10 129 334 - -
Gabi1650g00004 395 Pfam Protein kinase domain 52 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1650g00004 395 Gene3D Transferase(Phosphotransferase) domain 1 128 332 - -
Gabi1650g00004 395 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1650g00004 Gabi-Chr1650 46635 50996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1650g00004 40 337 Receptor kinase-like Gene Family AT4G11530 52.667 1.76e-109 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1650g00004 Pkinase 4.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1650g00004 - - gmx:100811523 660.218