Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1647g00010 ATGGCAACAATACTAATTACCATCCTTAGATTTCTTGGCTTCATGACCCTCTTCATCACAGCAAGTGCACAATCCCCAGACTACATGGGTGATGACTGCCAAAACTCAACAGAAGAAGCTCTCACAACTACATACCAAACCAACCTTAACAACTTCCTCTCATGGCTATCATCTGATGTTACCACAAGCAATGGATATAACCACACCATCATAGAAACCAACACAGTTGATGCTATCTATGGTCTCTATGATTGCAGGGGTGATGTCACAGGATCTTTCTGCCATTTCTGTGTCTCTACTGCAGCCTCAGAAATTCTTCAGCGCTGTCCTAACAGATCCTCTGTTGTTATATGGTATAACTACTGCGTTCTAAGATACTCAAACCATGATTTTATTGGGAACCTTACAACAACCCCATCAATACAAAATGTGGGAGACAAGAACATCACTAATCCAGAAGAACTTCAGAAAGCTGATAATTATATGCAAAGTTTGATAAGAGAAGCTACCGTGGAGACCAACCAGTTGTTTGCAATGGGTGAGTTCAACTTGAGTACTTCTGAGGAAAGGTATGGTTTGGTGCAGTGCAGCAGGGACATTACTGCTGATGAGTGCAGCCAGTGTTTGGAGGCTATGTTGGACAAAGTTCCTCAATGCTGTGGAACAAAGCTGAATTGGCAGGTTTCAGCTCCAAGCTGTCTGATGAAGTATGATGACTATATGTTTTACCAGATTACTAATCAAACATCTTCTCCTTCGCCTAATTCAGGTACATGTACCAATCAGGGAGGTACAAATGAACTGCTATTAGAGACTACTCCTACATCTTATCATGACCATGTTCAAAGAGAGGAATCACTGAATGCAGACCTTCCTACAATCCCTTTAATTTGGATTCGACAGAGCACTAATAACTTCTCAGAATTCTGTAAATTAGGAGAAGGTGGATTTGGCCCAGTTTACAAGGGTAATTTAGAAGATGGAACAGATGTTGCTGTCAAAAGACTCTCTAAAACATCTGGTCAAGGTTTAGAGGAGTTCAAGAATGAAGTAATATTCATAGCTAAACTACAACATAGGAACCTTGTGAGACTCTTGGGTTGCTGCTATGAGGAAAATGAAAAGCTGCTTGTATATGAGTACATGCCAAATTCTAGCCTTGACTCTCACCTGTTCAATGAGGAAAAACGAAAACAGATAGATTGGAAGTTACGACTGAGCATTATTAATGGAATTGCAAAAGGACTTCTATACCTTCATGAAGACTCTAGAGTTAGAGTAATCCATAGAGATGTGAAAGCCAGCAATGTTCTTCTGGATCAAGAGATGAATCCTAAAATATCTGACTTTGGAATGGCAAGGGCATTTGAAAAAGGCCAAAGTCAGGACAATACTAAAAGAGTTATGGGCACCTATGGATACATGGCTCCAGAATATGCTATGGAAGGGATATATTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAAATCATTTGTGGGAAAAGAAACGGTGGATTCTATCTTTCAGAACATGGTCAAAGTCTTCTTATATATAGTTGGAGACTTTGGTGTGAAGGAAAAAGTTTGGAACTGTTAGATCCAACACTGGAAAAGACATACATAGCCAATGAAGTTATGAAGTGCATACACATTGCTTTGTTGTGTGTACAGGAAGATGCAGAAGATCGACCAACCATGTCCATGGTTGTTTTCATGCTGGCAAGTGACACATCGATCCTTCCCAACCCTAATCATCCTGCATTTTCAGTTGGAAGAAAGATCAAGGAAGAAGGATCATCATCAAAAGCTTCCAAGGATCCTTCCATTAATCAAGTAACAATATCAAATATTTTACCCAGATAG 1875 0.3968 MATILITILRFLGFMTLFITASAQSPDYMGDDCQNSTEEALTTTYQTNLNNFLSWLSSDVTTSNGYNHTIIETNTVDAIYGLYDCRGDVTGSFCHFCVSTAASEILQRCPNRSSVVIWYNYCVLRYSNHDFIGNLTTTPSIQNVGDKNITNPEELQKADNYMQSLIREATVETNQLFAMGEFNLSTSEERYGLVQCSRDITADECSQCLEAMLDKVPQCCGTKLNWQVSAPSCLMKYDDYMFYQITNQTSSPSPNSGTCTNQGGTNELLLETTPTSYHDHVQREESLNADLPTIPLIWIRQSTNNFSEFCKLGEGGFGPVYKGNLEDGTDVAVKRLSKTSGQGLEEFKNEVIFIAKLQHRNLVRLLGCCYEENEKLLVYEYMPNSSLDSHLFNEEKRKQIDWKLRLSIINGIAKGLLYLHEDSRVRVIHRDVKASNVLLDQEMNPKISDFGMARAFEKGQSQDNTKRVMGTYGYMAPEYAMEGIYSVKSDVFSFGVLLLEIICGKRNGGFYLSEHGQSLLIYSWRLWCEGKSLELLDPTLEKTYIANEVMKCIHIALLCVQEDAEDRPTMSMVVFMLASDTSILPNPNHPAFSVGRKIKEEGSSSKASKDPSINQVTISNILPR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1647g00010 624 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Gabi1647g00010 624 Pfam Salt stress response/antifungal 157 240 IPR002902 -
Gabi1647g00010 624 SUPERFAMILY Protein kinase-like (PK-like) 291 590 IPR011009 -
Gabi1647g00010 624 SMART serkin_6 306 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1647g00010 624 FunFam Liguleless narrow1 382 585 - -
Gabi1647g00010 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Gabi1647g00010 624 FunFam Cysteine-rich receptor-like protein kinase 10 141 242 - -
Gabi1647g00010 624 Gene3D - 27 131 IPR038408 -
Gabi1647g00010 624 Gene3D - 137 242 IPR038408 -
Gabi1647g00010 624 Gene3D Transferase(Phosphotransferase) domain 1 382 584 - -
Gabi1647g00010 624 CDD STKc_IRAK 312 577 - -
Gabi1647g00010 624 Pfam Domain of unknown function (DUF3403) 579 624 IPR021820 GO:0004674
Gabi1647g00010 624 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 271 381 - -
Gabi1647g00010 624 Pfam Protein tyrosine and serine/threonine kinase 311 574 IPR001245 GO:0004672|GO:0006468
Gabi1647g00010 624 Gene3D Phosphorylase Kinase; domain 1 271 381 - -
Gabi1647g00010 624 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 41 620 - -
Gabi1647g00010 624 ProSiteProfiles Gnk2-homologous domain profile. 137 242 IPR002902 -
Gabi1647g00010 624 FunFam Cysteine-rich receptor-like protein kinase 28 29 130 - -
Gabi1647g00010 624 ProSiteProfiles Gnk2-homologous domain profile. 27 131 IPR002902 -
Gabi1647g00010 624 ProSiteProfiles Protein kinase domain profile. 306 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1647g00010 Gabi-Chr1647 142958 146841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1647g00010 11 624 Receptor kinase-like Gene Family AT4G05200 40.752 4.64e-170 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1647g00010 PK_Tyr_Ser-Thr 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1647g00010 - - mtr:25490357 896.73