Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1647g00008 ATGGGTTTTGAACCATTAATTTGGTACTGCCAGCCAGCAGCAAACAGTATTTGGGAAAAAGTAGTGGATAATGTTTTTGGGTCCTATACACCTTGTGCAATTGACACACTTGTTATCTCCATCTCCAATTTGGTTCTTATGGGCCTGTGCTTATATCGAATATGTCTTATCACTAGCAATGCCAAAGCTCAGAGGTTTCGTTTGAGTTCAAATTACTATAATTATGTTCTGGGAATGTTGGCTGGTTACTGTGCTGCTCAGCCTTTATGGAGATTGGTAACTGGAATTTCAGCCTTCAATCTGAATGGGGAAACTGGTTTTGCTCCTTTTGAGATAACAGCTTTGATCATTGAAGCACTTACTTGGTTCTCAATGATAATTCTTATCCTCTTGGAAACCAAGGTTTATATCCGACAATTTAGATGGTTGGTGCGGTTTGGAGTTATCTATGTTTTGGTGGGAGATATTGTAATGCTTAACCTTCTTCTGTCAGTGAAAGATTACTGCAGCAGATCTGCCCTGTTTCTGTACATTAGCAGTGTTACCTGCCAGGTGTTATTTGGCACCTTACTTCTTGTTTACATGCCTAATTTGGTTCCCTATTCTGGCCATATAATAATGCCAACTGAGGAACCTGACAATGGTGTATATGAACCACTTTGTGGAGAAGATCAAGTTTGCCCTGAGATGTATGGCAATGTATTCTCTAGATTAAGTTTTGGATGGATAACTCCACTCATGCAACAAGGCTACAGAAAACCCATCACCGAGAAGGATGTTTGGAAGCTAGACAAATGGGATCATACAGAGACATTAAATGAAAAATTCCAAAAATGTTGGATGTTAGAATTCCAAAACTCTAACCCTTGGCTTTTAAAAGCATTGAACAATAGCCTAGGAAAAAGGTTTTGGTGGGGAGGCATCTATAAGATTGGTAATGATCTTTCTCAGTTTTTGGGGCCTATTTTGCTGAACCATCTCTTAAATTCAATGCAAAATGGAGATCCATCCTGGATTGGTTACATCTACGCCTTCTCCATATTTGTTGGAGTGTCATTCGGTGTTCTATGTGAAGCACAGTATTTCCAGAATGTTATGCGAGTTGGTTTTCGGCTTAGATCAACTTTGGTGGCTGCTATATTTAGAAAATCTTTGAGGCTAACTCATGAAGGTCGAAAGCCATTCACAACTGGGAAGCTCATGAATATGATAACATCAGATGCCAATGCACTGCAGCAAATATGCCAACAACTTCATGGACTATGGTCAGCGCCATTCCGTATCATCATAGCTATGGTTCTCCTATACCAGCAACTAGGTGTTGCTTCCCTTATTGGATCAATAATGCTAGTTCTCATTCTCCCACTGCAGACTTTTGTGATTAGCAAAATGCGTAAACTGACAAAGCAAGGACTGCAACAGACCGACAAAAGGGTTGGCCTCATGGGTGAAATTCTTGCTGCCATGGATACTGTAAAATGTTATGCTTGGGAATCAAGCTTTCAATCCAGAGTTCAAAGCATACGAGATGAGGAGCTTTCATGGTTCCGCAAAGCACAGCTGCTATATGCTCTTAACACTTTTATACTAAACAGCATCCCAGTTCTTGTGACAGTGACCTCATTTGGAATGTTTACTTTACTTGGTGGAGAATTGACACCTGCAAGGGCATTTACCTCACTATCTCTGTTTGCAGTTTTGCGCTTTCCATTAAATATGCTTCCAAATTTACTTAGTCAGGTAGCAAATGCAAATGTCTCGTTGCAACGATTAGAAGAACTGTTTTCGTCTGAGGAGCGAAATTTAAAACAAAATCCACCTATTGTACCTGGACTTCCAGCCATCTCAATTAAGAATGGAAACTTTTCATGGGATCCTAAGGCAGAGAAGCCAACATTATCAAATATCAATGTGGAAATACAAATCGGCAGCTTAGTAGCAATCATTGGTGGTACTGGAGAAGGGAAGACATCACTTATTTCAGCAATGATTGGAGAGCTACATCCCCTAGCTGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCTACTGTTCGTGAAAATGTATTATTTGGATCAAAATTCGAATATGAACGATATTGGAAGGCCATTGATGTCACTGCTTTGGAGCATGATCTCAACTTACTACCTGGACGTGATTTTACAGAGATTGGCGAAAGAGGAGTCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCCTTAGCTAGGGCCGTATACTCAGATTCTGATGTGTACATATTTGATGATCCTTTAAGTGCTCTTGATGCTCATGTTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGGGTTGAGAGGAAAAACCAGGGTTCTTGTGACCAACCAGCTACATTTTCTCCCTCAGGTGGATAAAATTATTCTGGTTAGTGATGGCATGATTAAAGAGCAAGGAACCTTTGAGGAGTTATCAGAAAATGGGATTCTATTTCAGAAACTAATGGAAAATGCAGGAAAAATGGAACAACAAGCTGTTAATAATGAAGATAGTGATAGTCATGACAAGGCTAACGTTTCACCCTCAAATAATGAGGCAAATGTAGTGTTACCAAATGATACAAGCTATGAAAAGAAGGGAAAATTAAGAAAATCAGTTCTTGTTAAGCAAGAAGAGCGGGAGACAGGTGCGGTTAGCTGGAAAGTTATAACGAGGTACAAATCTGCACTGGGAGGACTGTGGGTTGTTTCCCTCCTCTTTGCATGCTATACATTAACAGAAGTTCTTCGAATTTCAAGTAGCACATGGTTAAGTGTGTGGACTTCTAAAGATTCCACTTCAGATTATGACTCAGGATATTTTCTTTTCATCTATGCACTTTTCTCATTTGGACAGGTATCTGTGGCACTTGTAAATTCTTATTGGTTGATCACTTCAAGTCTTCGTGCTGCCAAAAGATTGCATGATGCAATGTTAGATAAAATCCTTCGTGCTCCAATGGTTTTCTTCCAAACTAATCCTGTTGGCCGCATAATTAATCGGTTTGCGAAAGACATGGGAGATATAGATACCACTGTTTTTAATTTGGCAAATATGTTTTTGGGACAAGTATGGCAACTACTTTCAACATTTGTTCTTATAGGCACTGTGAGCACAATATCCCTGTGGGCCATAATGCCACTTCTGATCTTCTTTTATGCAGCTTTTATATATTACCAGAGCACGGCTCGAGAGGTGAAGCGTTTGGATTCAATTACAAGATCTCCAGTTTATGCACATTTTGGAGAAGCACTGAATGGTTTGTCTAGCATTCGGGCTTACAAAGCATATGACAGGATGGCACACATTAATGGAAAATTCATGGACAACAATATCAGATTTACCCTTGTGAATATTAGCTCAAACCGTTGGCTCACCATAAGGTTAGAATCATTAGGAGGCCTCATGATTTGGTTGATAGCAACATTTGCTGTCTTGCAGAATGCAAGAGCTGAAAATCAAGCAATGTTTGCATCTACAATGGGTCTACTTCTCAGTTATACTTTAAACATAACAAATCTCTTGAGTGGTGTACTAAGACAAGCAAGTAGAGCTGAAATCAGTTTAAATGCTGTTGAGCGCGTTGACACATATATAGAGTTAGAAACTGAGGCTTCAGGTATAATTGAGACAAACCGTCCACCACCAGGATGGCCAACATCAGGATCAATTGAGTTTGAGAATGTTGTTCTTAGGTATAGGCCTGAACTTCCTCCAGTTTTGCATGGATTGTCCTTTACAGTGCCTCCAACTAAGAAGGTAGGAGTAGTTGGAAGAACTGGTGCTGGAAAGTCTAGCATGCTTAATGCTTTATTCCGGATTGTGGAACTGACAAGAGGAAGAATCAGTATTGATGGTTGTGATATTTCTATGATTGGACTAGCAGATTTGCGAAGTGTTCTTACTATCATACCACAATCCCCAGTTCTTTTCTCAGGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATACTGACCTATGGGAAGCTTTAGAAAGGGCGCATTTGAAGGATGTAATAAGAAGAAATCCATTTGGTCTAGATGCTCAGGTCTCAGAGGGAGGAGACAATTTCAGTGTTGGACAGAGGCAACTATTAAGTCTAGCTAGAGCATTGCTACGAAGATCAAAGGTTCTAGTCCTGGATGAAGCTACTGCTGCTGTAGATGTTAGAACAGATGCCCTTATACAGAAAACTATCCGACAAGAATTTCAGTCCTGCACAATGATCATCATTGCTCACAGACTTAATACAGTTATTGACTGCGATCAGATTCTGTTACTTGATGCCGGCGAGGTTATTGAATACAGTTCACCAGAGGAACTCTTACTAGATGAAGGAACTGCATTCTACAAGATGGTTCAAAGTACTGGACCTGAAAATGCTAAGTATTTATGTAGCCTAGTATTTGGAAGAACAGGGAACAATTCTAATGAATATAACAAGGGGCTGGAAAGCCATATGAGACAATTAGCCTCTTCTCACTGGGCTGCTGCTACCCAGTTTGCAATGGCAAGTACCCTTTCTTCATTACACCATCATCTTCAAAGTCCAAGTACAAAAGACAATAAAGATATCCTTCATAAAACAAGGGATGCGGTGACAACACTGCAAGAAGTTTTAGTGGGGAAGCATGATGAAGCCATAGAAGAGACACTGACTAAACAACATGTTCCTACAGATAGATGGTGGTCTACTCTCTATAAAGTTGTTGAAGGTCTTGCAATCTTGATCAGGTTGCCTCCGGACAACAGTCAACAATTGGAACTTGATTTTGAAGGAAGATCCTTCGACTAA 4851 0.3991 MGFEPLIWYCQPAANSIWEKVVDNVFGSYTPCAIDTLVISISNLVLMGLCLYRICLITSNAKAQRFRLSSNYYNYVLGMLAGYCAAQPLWRLVTGISAFNLNGETGFAPFEITALIIEALTWFSMIILILLETKVYIRQFRWLVRFGVIYVLVGDIVMLNLLLSVKDYCSRSALFLYISSVTCQVLFGTLLLVYMPNLVPYSGHIIMPTEEPDNGVYEPLCGEDQVCPEMYGNVFSRLSFGWITPLMQQGYRKPITEKDVWKLDKWDHTETLNEKFQKCWMLEFQNSNPWLLKALNNSLGKRFWWGGIYKIGNDLSQFLGPILLNHLLNSMQNGDPSWIGYIYAFSIFVGVSFGVLCEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTHEGRKPFTTGKLMNMITSDANALQQICQQLHGLWSAPFRIIIAMVLLYQQLGVASLIGSIMLVLILPLQTFVISKMRKLTKQGLQQTDKRVGLMGEILAAMDTVKCYAWESSFQSRVQSIRDEELSWFRKAQLLYALNTFILNSIPVLVTVTSFGMFTLLGGELTPARAFTSLSLFAVLRFPLNMLPNLLSQVANANVSLQRLEELFSSEERNLKQNPPIVPGLPAISIKNGNFSWDPKAEKPTLSNINVEIQIGSLVAIIGGTGEGKTSLISAMIGELHPLADGNATIRGTVAYVPQISWIYNATVRENVLFGSKFEYERYWKAIDVTALEHDLNLLPGRDFTEIGERGVNISGGQKQRVSLARAVYSDSDVYIFDDPLSALDAHVAQEVFRNCIKEGLRGKTRVLVTNQLHFLPQVDKIILVSDGMIKEQGTFEELSENGILFQKLMENAGKMEQQAVNNEDSDSHDKANVSPSNNEANVVLPNDTSYEKKGKLRKSVLVKQEERETGAVSWKVITRYKSALGGLWVVSLLFACYTLTEVLRISSSTWLSVWTSKDSTSDYDSGYFLFIYALFSFGQVSVALVNSYWLITSSLRAAKRLHDAMLDKILRAPMVFFQTNPVGRIINRFAKDMGDIDTTVFNLANMFLGQVWQLLSTFVLIGTVSTISLWAIMPLLIFFYAAFIYYQSTAREVKRLDSITRSPVYAHFGEALNGLSSIRAYKAYDRMAHINGKFMDNNIRFTLVNISSNRWLTIRLESLGGLMIWLIATFAVLQNARAENQAMFASTMGLLLSYTLNITNLLSGVLRQASRAEISLNAVERVDTYIELETEASGIIETNRPPPGWPTSGSIEFENVVLRYRPELPPVLHGLSFTVPPTKKVGVVGRTGAGKSSMLNALFRIVELTRGRISIDGCDISMIGLADLRSVLTIIPQSPVLFSGTVRFNLDPFNEHNDTDLWEALERAHLKDVIRRNPFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMIIIAHRLNTVIDCDQILLLDAGEVIEYSSPEELLLDEGTAFYKMVQSTGPENAKYLCSLVFGRTGNNSNEYNKGLESHMRQLASSHWAAATQFAMASTLSSLHHHLQSPSTKDNKDILHKTRDAVTTLQEVLVGKHDEAIEETLTKQHVPTDRWWSTLYKVVEGLAILIRLPPDNSQQLELDFEGRSFD 1616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1647g00008 1616 SUPERFAMILY ABC transporter transmembrane region 916 1219 IPR036640 GO:0005524|GO:0016020
Gabi1647g00008 1616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1229 1472 IPR027417 -
Gabi1647g00008 1616 SMART AAA_5 642 822 IPR003593 GO:0016887
Gabi1647g00008 1616 SMART AAA_5 1265 1458 IPR003593 GO:0016887
Gabi1647g00008 1616 FunFam ABC transporter C family member 2 279 600 - -
Gabi1647g00008 1616 CDD ABCC_MRP_domain1 615 815 - -
Gabi1647g00008 1616 Pfam ABC transporter 1256 1404 IPR003439 GO:0005524
Gabi1647g00008 1616 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1239 1473 IPR003439 GO:0005524
Gabi1647g00008 1616 Gene3D - 613 848 IPR027417 -
Gabi1647g00008 1616 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Gabi1647g00008 1616 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 233 1480 - -
Gabi1647g00008 1616 FunFam Multidrug resistance-associated protein member 4 1223 1475 - -
Gabi1647g00008 1616 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Gabi1647g00008 1616 MobiDBLite consensus disorder prediction 844 872 - -
Gabi1647g00008 1616 CDD ABCC_MRP_domain2 1237 1457 - -
Gabi1647g00008 1616 Gene3D ABC transporter type 1, transmembrane domain 285 600 IPR036640 GO:0005524|GO:0016020
Gabi1647g00008 1616 Gene3D ABC transporter type 1, transmembrane domain 880 1220 IPR036640 GO:0005524|GO:0016020
Gabi1647g00008 1616 FunFam ABC transporter C family member 2 882 1220 - -
Gabi1647g00008 1616 ProSitePatterns ABC transporters family signature. 1376 1390 IPR017871 GO:0005524|GO:0016887
Gabi1647g00008 1616 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 920 1198 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1647g00008 1616 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Gabi1647g00008 1616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 838 IPR027417 -
Gabi1647g00008 1616 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1647g00008 1616 FunFam ABC transporter C family member 2 609 855 - -
Gabi1647g00008 1616 CDD ABC_6TM_ABCC_D2 918 1214 IPR044726 GO:0140359
Gabi1647g00008 1616 SUPERFAMILY ABC transporter transmembrane region 290 599 IPR036640 GO:0005524|GO:0016020
Gabi1647g00008 1616 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 617 839 IPR003439 GO:0005524
Gabi1647g00008 1616 Coils Coil 574 601 - -
Gabi1647g00008 1616 Pfam ABC transporter transmembrane region 307 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1647g00008 1616 Pfam ABC transporter transmembrane region 920 1165 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi1647g00008 1616 Gene3D - 1223 1475 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1647g00008 Gabi-Chr1647 67475 107305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1647g00008 560 829 Calmodulin-binding Proteins AT2G36910 25.862 1.14e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1647g00008 - K05665 vun:114175221 2798.85