Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1642g00023 ATGGCAATTGCAGCGGCAACCTCATCGCCCACCATGAGCCTGAGCCATAGCCACAGCCATGATGATGACTCCACCACCAACGACGTCAACGTGAACGATACAAAGCCAGATGAGCATGAGCACGACATGGTCATGCCCGGGTTTCGGTTCCACCCAACTGAAGAAGAGCTCGTTGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCGTTTCAACGTTGAGCTCATTACTTTTCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCGTTGGCAGCTATTGGTGAAAAGGAATGGTACTTTTATGTGCCTAGAGATAGAAAGTATCGCAACGGTGATCGTCCAAATCGTGTTACTACCTCTGGGTATTGGAAGGCAACGGGAGCTGATAGGATGATTCGAACCGAGCACTTTCGATCAATCGGGTTGAAGAAAACCCTAGTTTTCTACTCTGGAAAAGCTCCTAAAGGCATCCGCACCAGTTGGATTATGAATGAGTATCGCTTGCCACAACATGAAACTGAACGATATCAAAAGGGTGAGATATCGCTTTGCCGGGTATACAAGAGAGCTGGAGTAGAAGACCATCCCTCCCTCCCTCGTTGTCTCCCAACAAGGCCATCCTTATCGAGAGGTTCACATTCAGAAAAGAATAAGCATAATGAAATGGTTCAACAGAACATGGGATTTGTTGGACAATCAAAACCAATGGATCAAATAGTTGACAAAATGAATGAAGCGGAGGGAAGCAGCAGTGCTGGTTCAGATGTGTCAACAGCTCTTGGACTTTCAAAGTACAATGCTTACCGTGCTGCTATGGGTGCACTTAGCACAACAATGGGACTACCTTTAGTTCCAATGGATCAGGAGGAAGGGCTGATGATGATGCAGCAATCTAAACAAGTGCATGTAGCCACCTCTTTAATCCCCGCTTGTGGAGCATTCTTCCCAGCTGGCCCTTCTTCCGCGTCTTCAAACAGTGCAATGATGGATGATCTCAATAGGCTAGTGAGTTATCAACAGCAGTACAACAATGTTCAAAGCCATCCTAATCAGTTCTCTAGTTTGCTGATGCAACAAGCACCAATTTCTCTCAACTCGCTACCAAATCCACTTCCAACCACCTTCTCTGACCGACTCTGGGAGTGGAATCCAATCCCTGAGGCAAGCCAAGACTACACCAACATCTCCTTCAAGTAA 1203 0.4697 MAIAAATSSPTMSLSHSHSHDDDSTTNDVNVNDTKPDEHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTEHFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKGEISLCRVYKRAGVEDHPSLPRCLPTRPSLSRGSHSEKNKHNEMVQQNMGFVGQSKPMDQIVDKMNEAEGSSSAGSDVSTALGLSKYNAYRAAMGALSTTMGLPLVPMDQEEGLMMMQQSKQVHVATSLIPACGAFFPAGPSSASSNSAMMDDLNRLVSYQQQYNNVQSHPNQFSSLLMQQAPISLNSLPNPLPTTFSDRLWEWNPIPEASQDYTNISFK 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1642g00023 400 Gene3D NAC domain 53 194 IPR036093 GO:0003677|GO:0006355
Gabi1642g00023 400 MobiDBLite consensus disorder prediction 1 42 - -
Gabi1642g00023 400 MobiDBLite consensus disorder prediction 1 15 - -
Gabi1642g00023 400 ProSiteProfiles NAC domain profile. 44 191 IPR003441 GO:0003677|GO:0006355
Gabi1642g00023 400 SUPERFAMILY NAC domain 44 190 IPR036093 GO:0003677|GO:0006355
Gabi1642g00023 400 Pfam No apical meristem (NAM) protein 46 170 IPR003441 GO:0003677|GO:0006355
Gabi1642g00023 400 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 41 302 - -
Gabi1642g00023 400 FunFam NAC domain-containing protein 35 53 194 - -
Gabi1642g00023 400 MobiDBLite consensus disorder prediction 199 220 - -
Gabi1642g00023 400 MobiDBLite consensus disorder prediction 16 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1642g00023 Gabi-Chr1642 174241 176553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1642g00023 43 207 NAC Transcription Factor Family AT2G02450 91.515 9.78e-113 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1642g00023 NAM 5.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1642g00023 - - gmx:100792622 587.415