Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1642g00017 ATGGAAGCGATACCGCACCCTATTCCTAGAACAGTTGAAGAGGTTTTCAGCGACTTTAAGGGCAGGAGAGCTGGATTGATTAAGGCCCTCACTACTGACGTTGAAAAGTTTTTCCAGCAGTGCGATCCTGAGAAGGAGAATTTGTGTCTATATGGATTTCCAAATGAAACATGGGAAGTGAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTTGCTAGGGATGGTATGCAAGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTCGCTGTTGCTTTCTATTTTGGTGCCCGGTTTGGTTTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATGAATGATCTGCCAACTATCTTTGAACTTGTGACGGGAAGTGCTAAGCAATCAAAGGACCAACTGGCTGCTCATAACAATGGTAGCAAATGCAAATCAAGTGGAAAGTCCCGCCAGTCTGAGTCTCAGGCCAAGGGAGTGAAGATGTCTGCACCACCCAAAGAAGAGGATGAGAGTGGAGAAGAAGAAGAAGAGGATAATGAGCAAGGTGCAACGTGTGGTGCTTGCGGTTGCGGTGATAATAATGGCACTGATGAATTCTGGATCTGTTGTGATATCTGTGAGATATGGTTCCATGGTAAATGTGTTAAAATTACTCCTTCTAAGGCTGAGCACATCAAGCAGTACAAGTGCCCGAGCTGCAGTAGTAACAAGAGGGCTAGAGTTTGA 768 0.4505 MEAIPHPIPRTVEEVFSDFKGRRAGLIKALTTDVEKFFQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMMNDLPTIFELVTGSAKQSKDQLAAHNNGSKCKSSGKSRQSESQAKGVKMSAPPKEEDESGEEEEEDNEQGATCGACGCGDNNGTDEFWICCDICEIWFHGKCVKITPSKAEHIKQYKCPSCSSNKRARV 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1642g00017 255 ProSiteProfiles Zinc finger PHD-type profile. 196 250 IPR019787 -
Gabi1642g00017 255 CDD PHD_AL_plant 199 250 IPR044104 -
Gabi1642g00017 255 PANTHER CPG BINDING PROTEIN 9 254 IPR045104 GO:0006355|GO:0042393
Gabi1642g00017 255 FunFam PHD finger alfin-like protein 191 249 - -
Gabi1642g00017 255 SUPERFAMILY FYVE/PHD zinc finger 188 250 IPR011011 -
Gabi1642g00017 255 ProSitePatterns Zinc finger PHD-type signature. 199 247 IPR019786 -
Gabi1642g00017 255 SMART PHD_3 201 248 IPR001965 -
Gabi1642g00017 255 MobiDBLite consensus disorder prediction 148 197 - -
Gabi1642g00017 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 249 IPR013083 -
Gabi1642g00017 255 Pfam PHD-finger 199 249 IPR019787 -
Gabi1642g00017 255 MobiDBLite consensus disorder prediction 148 172 - -
Gabi1642g00017 255 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1642g00017 Gabi-Chr1642 146347 151460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1642g00017 1 255 Alfin-like Transcription Factor Family AT1G14510 79.216 4.58e-131 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi1642g00017 Alfin 1.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1642g00017 K26274 - gmx:100807826 459.529