Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1642g00016 ATGGAAGCGATACCGCACCCTATTCCTAGAACAGTTGAAGAGGTTTTCAGCGACTTTAAGGGCAGGAGAGCTGGATTGATTAAGGCCCTCACTACTGACGTTGAAAAGTTTTTCCAGCAGTGCGATCCTGAGAAGGAGAATTTGTGTCTATATGGATTTCCAAATGAAACATGGGAAGTGAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTTGCTAGGGATGGTATGCAAGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTCGCTGTTGCTTTCTATTTTGGTGCCCGGTTTGGTTTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATGAATGATCTGCCAACTATCTTTGAACTTGTGACGGGAAGTGCTAAGCAATCAAAGGACCAACTGGCTGCTCATAACAATGGTAGCAAATGCAAATCAAGTGGAAAGGTGTCCCGCCAGTCTGAGTCTCAGGCCAAGGGAGTGAAGATGTCTGCACCACCCAAAGAAGAGGATGAGAGTGGAGAAGAAGAAGAAGAGGATAATGAGCAAGGTGCAACGTGTGGTGCTTGCGGTTGCGGTGATAATAATGGCACTGATGAATTCTGGATCTGTTGTGATATCTGTGAGATATGGTTCCATGGTAAATGTGTTAAAATTACTCCTTCTAAGGCTGAGCACATCAAGCAGTACAAGTGCCCGAGCTGCAGTAGTAACAAGAGGGCTAGAGTTTGA 771 0.4514 MEAIPHPIPRTVEEVFSDFKGRRAGLIKALTTDVEKFFQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMMNDLPTIFELVTGSAKQSKDQLAAHNNGSKCKSSGKVSRQSESQAKGVKMSAPPKEEDESGEEEEEDNEQGATCGACGCGDNNGTDEFWICCDICEIWFHGKCVKITPSKAEHIKQYKCPSCSSNKRARV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1642g00016 256 SUPERFAMILY FYVE/PHD zinc finger 189 251 IPR011011 -
Gabi1642g00016 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 250 IPR013083 -
Gabi1642g00016 256 MobiDBLite consensus disorder prediction 148 173 - -
Gabi1642g00016 256 PANTHER CPG BINDING PROTEIN 9 255 IPR045104 GO:0006355|GO:0042393
Gabi1642g00016 256 SMART PHD_3 202 249 IPR001965 -
Gabi1642g00016 256 ProSiteProfiles Zinc finger PHD-type profile. 197 251 IPR019787 -
Gabi1642g00016 256 Pfam PHD-finger 200 250 IPR019787 -
Gabi1642g00016 256 CDD PHD_AL_plant 200 251 IPR044104 -
Gabi1642g00016 256 MobiDBLite consensus disorder prediction 148 198 - -
Gabi1642g00016 256 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Gabi1642g00016 256 ProSitePatterns Zinc finger PHD-type signature. 200 248 IPR019786 -
Gabi1642g00016 256 FunFam PHD finger alfin-like protein 192 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1642g00016 Gabi-Chr1642 146347 151464 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1642g00016 1 256 Alfin-like Transcription Factor Family AT1G14510 79.297 1.99e-129 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi1642g00016 Alfin 1.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1642g00016 K26274 - gmx:100807826 460.299