Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1642g00014 ATGGAAGCGATACCGCACCCTATTCCTAGAACAGTTGAAGAGGTTTTCAGCGACTTTAAGGGCAGGAGAGCTGGATTGATTAAGGCCCTCACTACTGACGTTGAAAAGTTTTTCCAGCAGTGCGATCCTGAGAAGGAGAATTTGTGTCTATATGGATTTCCAAATGAAACATGGGAAGTGAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTTGCTAGGGATGGTATGCAAGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTCGCTGTTGCTTTCTATTTTGGTGCCCGGTTTGGTTTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATGAATGATCTGCCAACTATCTTTGAACTTGTGACGGGAAGTGCTAAGCAATCAAAGGACCAACTGGCTGCTCATAACAATGGTAGCAAATGCAAATCAAGTGGAAAGGTGTCTGAGTCTCAGGCCAAGGGAGTGAAGATGTCTGCACCACCCAAAGAAGAGGATGAGAGTGGAGAAGAAGAAGAAGAGGATAATGAGCAAGGTGCAACGTGTGGTGCTTGCGGTTGCGGTGATAATAATGGCACTGATGAATTCTGGATCTGTTGTGATATCTGTGAGATATGGTTCCATGGTAAATGTGTTAAAATTACTCCTTCTAAGGCTGAGCACATCAAGCAGTACAAGTGCCCGAGCTGCAGTAGTAACAAGAGGGCTAGAGTTTGA 762 0.4475 MEAIPHPIPRTVEEVFSDFKGRRAGLIKALTTDVEKFFQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMMNDLPTIFELVTGSAKQSKDQLAAHNNGSKCKSSGKVSESQAKGVKMSAPPKEEDESGEEEEEDNEQGATCGACGCGDNNGTDEFWICCDICEIWFHGKCVKITPSKAEHIKQYKCPSCSSNKRARV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1642g00014 253 SMART PHD_3 199 246 IPR001965 -
Gabi1642g00014 253 MobiDBLite consensus disorder prediction 151 195 - -
Gabi1642g00014 253 FunFam PHD finger alfin-like protein 189 247 - -
Gabi1642g00014 253 CDD PHD_AL_plant 197 248 IPR044104 -
Gabi1642g00014 253 ProSiteProfiles Zinc finger PHD-type profile. 194 248 IPR019787 -
Gabi1642g00014 253 ProSitePatterns Zinc finger PHD-type signature. 197 245 IPR019786 -
Gabi1642g00014 253 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Gabi1642g00014 253 SUPERFAMILY FYVE/PHD zinc finger 186 248 IPR011011 -
Gabi1642g00014 253 PANTHER CPG BINDING PROTEIN 9 252 IPR045104 GO:0006355|GO:0042393
Gabi1642g00014 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 247 IPR013083 -
Gabi1642g00014 253 MobiDBLite consensus disorder prediction 151 167 - -
Gabi1642g00014 253 Pfam PHD-finger 197 247 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1642g00014 Gabi-Chr1642 146347 151465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1642g00014 1 253 Alfin-like Transcription Factor Family AT1G14510 78.431 2.65e-128 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi1642g00014 Alfin 1.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1642g00014 K26274 - gmx:100807826 453.751