Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1642g00013 ATGGAAGCGATACCGCACCCTATTCCTAGAACAGTTGAAGAGGTTTTCAGCGACTTTAAGGGCAGGAGAGCTGGATTGATTAAGGCCCTCACTACTGACGTTGAAAAGTTTTTCCAGCAGTGCGATCCTGAGAAGGAGAATTTGTGTCTATATGGATTTCCAAATGAAACATGGGAAGTGAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTTGCTAGGGATGGTATGCAAGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTCGCTGTTGCTTTCTATTTTGGTGCCCGGTTTGGTTTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATGAATGATCTGCCAACTATCTTTGAACTTGTGACGGGAAGTGCTAAGCAATCAAAGGACCAACTGGCTGCTCATAACAATGGTAGCAAATGCAAATCAAGTGGAAAGTCTCAGGCCAAGGGAGTGAAGATGTCTGCACCACCCAAAGAAGAGGATGAGAGTGGAGAAGAAGAAGAAGAGGATAATGAGCAAGGTGCAACGTGTGGTGCTTGCGGTTGCGGTGATAATAATGGCACTGATGAATTCTGGATCTGTTGTGATATCTGTGAGATATGGTTCCATGGTAAATGTGTTAAAATTACTCCTTCTAAGGCTGAGCACATCAAGCAGTACAAGTGCCCGAGCTGCAGTAGTAACAAGAGGGCTAGAGTTTGA 753 0.4462 MEAIPHPIPRTVEEVFSDFKGRRAGLIKALTTDVEKFFQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMMNDLPTIFELVTGSAKQSKDQLAAHNNGSKCKSSGKSQAKGVKMSAPPKEEDESGEEEEEDNEQGATCGACGCGDNNGTDEFWICCDICEIWFHGKCVKITPSKAEHIKQYKCPSCSSNKRARV 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1642g00013 250 Pfam PHD-finger 194 244 IPR019787 -
Gabi1642g00013 250 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Gabi1642g00013 250 SUPERFAMILY FYVE/PHD zinc finger 183 245 IPR011011 -
Gabi1642g00013 250 ProSiteProfiles Zinc finger PHD-type profile. 191 245 IPR019787 -
Gabi1642g00013 250 PANTHER CPG BINDING PROTEIN 9 249 IPR045104 GO:0006355|GO:0042393
Gabi1642g00013 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 244 IPR013083 -
Gabi1642g00013 250 SMART PHD_3 196 243 IPR001965 -
Gabi1642g00013 250 MobiDBLite consensus disorder prediction 151 192 - -
Gabi1642g00013 250 CDD PHD_AL_plant 194 245 IPR044104 -
Gabi1642g00013 250 ProSitePatterns Zinc finger PHD-type signature. 194 242 IPR019786 -
Gabi1642g00013 250 MobiDBLite consensus disorder prediction 151 166 - -
Gabi1642g00013 250 FunFam PHD finger alfin-like protein 186 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1642g00013 Gabi-Chr1642 146347 151465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1642g00013 1 250 Alfin-like Transcription Factor Family AT1G14510 77.255 1.53e-126 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi1642g00013 Alfin 1.2e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1642g00013 K26274 - gmx:100807826 444.506