Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1642g00012 ATGTCAGAAATGCGAGTGTCTGATCCGAGCAAGCTTCACCTGAAGAAGGAGCTCACCCAAATTCGTAAGGCTGCTCGTGTATTGAGGGATCCTGGCACAACATCTTCATGGAAGTCACCACTTAGTTCCTCAAGATCTGTCGCTGCTGCTGCTTGGAAGGACAGTACTGCCACTCGGAGTAGAAGGTTCTCTCCCAATGCTCAACACAACAGCAACGACAAAGATAAAGATAAAGATAAAGAGAAAGAGAAGAAGGTGTTCTTGTATAACTGGAAGAATTACAAATCGTCGAGCGAGAAGAGTGTAGTGGCCAAATACAATGAGGAAGAAGAAGAAGAAGATGATGGTGGTGGATCTTCGTCCCTTCTTGGAAGTTTTGAGGACAGCTTGAGTGATGCTCGCAATGGTTGTGGTTCAAAGAGTGATACTTACTTGGGTGGTGGAACTCGTTCTTCTATTTTCGGATGTGGAGATGCAAATCTTGTTTCCCCAGCAGCTAGAAGAACAGCGACCGTCAAGAAAAAGAGTAAGACAACCAACGCCCATTTTGATATTTTAACAAAACATCAGCATCAGCATCAGCAGCAGCAGCAGCAGCATAGATTTGTAAAGTCCAAGGCATTGCATCCTTCTATGGCTTTTAGCAGGGATGTCTCGGTTGAATACTCTGATGATACTGAAGATTACTCTAACTATGAGGATGCAAAACGAGTTTTAGGGACATCTCCTTTGCTTCTGAAACTCAAGCAGAGGAATTGGTCTCGCTCTTCCTCCAAGTTTTTGAAAAGAAGCCAAAAGGAAGACTCTTCCTACTCTTATAGTACCCCTGCATTGTCAACCAGTTCTTACAATATATACGGTCCCCGTTATCCGAGCACCGCTGGATCCTGGGATGGCACCACAACCTCAGTGTATGATGGTGATGGTTATGGTTATGGTGATGGTGATGATGAGATTGATGATAATTTGGATTTTCCTGGCCGCCAAGGGTGTGGAATTCCTTGCTATTGGTCAAAGAGGACACCGAAACATAGAGGGATGTGTGGAAGTTGTTATTCTCCTTCACTGTCGGACACTTTAAAGAGGAAAGGAAGTAGCATACTCTGTGGAGGTCAAACTATTTATCCAAGACACCGGAGATCCTCTTCGGCCTCCCTCAAACGGAGAATTCCTTCGAGGAGTGCTCGAGGTGTTATTCCACTGCTCACTAACAGTGGTGATGTTAGAGAAGGTTCATCTATAGGAACTGGTAGGAGTGATGATGAACTTTCTACAAACTTCGGGGAGCTTGATCTTGAGGGCTTGAGCAGATTGGATGGAAGAAGGTGGTCATCAAGTTGTAGGAGTCAGGAGGGATTGGAGATTGTAGCTCTCAATGGAGAAGGGGAGGATGAAGGCACACCAGAAAATAGGAGTTTCAGCCAGAAGTATAAGCCCATGTTCTTTGGAGAACTGATTGGGCAGAATATTGTGGTTCAGTCACTTATCAATGCAGTTTCGAGGGGCCGAATTGCTCCTGTCTATCTTTTTCTAGGTCCCCGTGGGACTGGTAAAACATCAGCAGCTAGGATATTTGCTGCTGCCTTGAATTGTGCTGCTCCTGATGAGAGTAATAAGCCTTGTGGTTACTGCAGGGACTGTGCTGATTTCATTTCTGGCAAGAGCAGTGATCTACTGGAGATTGATGGAACCAATAAGAAAGGAATTGATAAAGCTAGGTATCTACTAAAAAGATTGTCAATTGGGTCATCATCGGCCTCTTCACGATATACAGTTTTTGTTATTGATGAGTGTCACTTGTTACCCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTGGAAGAACCGCCTCAACGAGTTGTATTCATATTTATAACCTCTGATCTCGACAATGTGCCACGAACAATACAATCTCGAAGCCAGAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTGACCAGGTTGAGGAAAATATCTACTCAGGAGAACCTCGATGTTGAAACAAATGCACTGGACCTCATTGCTATGAATGCAGATGGTTCCCTTCGAGATGCAGAAACAATGTTAGAACAGCTTAGTTTGCTTGGAAAAAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGTTGGCAATGTCATCAGACACTGCAGAGACGGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGCCTTATTATGGACATCATTGCTGGATCATATACGGTCGTTGATGCCAAACCAGATGATTCATTCTTTGGTGGACGAAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAAAATTCTTTGAAGCTTCTCTCCGAGGCTGAGAAACAGTTAAGGACTTCCAGTGAACGCTCAACATGGTTCACAGCAACTCTGTTACAGCTTGGTTCTATGCCTTCTCCAGATCTTACTCAGTCTGGCAGCAGCAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTTCTTCAAGAGACATTACTACTTGCAAACACAAGTCAGACCTTCAATATATGCCTCGAAGATCAACATCCCCTGCATCCCAGCAAAAAGCAGTAAATGGCAATTCCAGCCATCAAAAGGATATATCCTCAAAGATTGATGGTTTCAGCTTGAAATCAAAGCCGCCAAATAGCCCGATCATTGATGATGGCTCCACACTGGTCTCATCTGATGATCTTATGGTGGGGAATAGGATGTTTAGATGCATAGATTCAGGGAAGTTGTGTGAAATCTGGGCGTGTTGTATGGGGAGGTGTCACTCTAAGACTTTGAGGCAGCTTCTACACAATCATGGAAAACTTGTGTCCATATGTGAAGTTGAAGGTGTTCTGGTAGCATATGTTGCATTTGGGGATGTAGATATTAAACTTAGGGCTGAGAGGTTTTTGAAAAGCATTACAAATTCCATGGAAATGGTTCTTAGTCGCCATGTGGAGGTCAGAATTGTCCACTTGCCTGATGCTGAAGTGGTAAATGAGAAGGAACAAAGAAATATTCTGGCTGAAGGAGATGGTGTGAGGGAGAGGAGACAGGATAATCCAATGCAGAGGATTGAATCCATCATTCGCGAGCAGCGGCTGGAAACTGCCTGGTTACAGGCTGTAGAAAAGGGTTCCCCTGGATCATTGAGTCGTTTGAGACCCGAGAAGAATCAGGTCCTGCCCCAGGATGGAATCGATGGTGTAGACCCACTGGAGTCCAAGGATTCAACTAATTTTGCCTCTCATCTGCATTGGGAAGATGACCTGAATAATGAAGTTAAAATTTTGAGTGCTAAAAATGGAAGGAATGTGCAGATGGATCCGATTGGTAAAAGGGCAGATCGTTATCCCATGTCCCCAAGTTTGTTACACGACAGCAGTTTAGCAACAATCTCTGGAAAAGACAATCTGGGATATGAATCAGCCCCCGGAGCCGGATGTTGTGGATTTTTATGTTGGAATAACTCCAAGCCTAGAAGTGTAGTTACTGTCAAAGGTACCCCCGTAGGAGCGCGCAAAGTTGGGCGTTTTGCATTGTTTGGTGAGTGTGGTAAGCCAAAGAGAAAGGAACGGAGAAGATAA 3651 0.4393 MSEMRVSDPSKLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAAAWKDSTATRSRRFSPNAQHNSNDKDKDKDKEKEKKVFLYNWKNYKSSSEKSVVAKYNEEEEEEDDGGGSSSLLGSFEDSLSDARNGCGSKSDTYLGGGTRSSIFGCGDANLVSPAARRTATVKKKSKTTNAHFDILTKHQHQHQQQQQQHRFVKSKALHPSMAFSRDVSVEYSDDTEDYSNYEDAKRVLGTSPLLLKLKQRNWSRSSSKFLKRSQKEDSSYSYSTPALSTSSYNIYGPRYPSTAGSWDGTTTSVYDGDGYGYGDGDDEIDDNLDFPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLSDTLKRKGSSILCGGQTIYPRHRRSSSASLKRRIPSRSARGVIPLLTNSGDVREGSSIGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEDEGTPENRSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFLGPRGTGKTSAARIFAAALNCAAPDESNKPCGYCRDCADFISGKSSDLLEIDGTNKKGIDKARYLLKRLSIGSSSASSRYTVFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRSQKYLFNKIKDGDIVTRLRKISTQENLDVETNALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVVDAKPDDSFFGGRSLNESELERLKNSLKLLSEAEKQLRTSSERSTWFTATLLQLGSMPSPDLTQSGSSRRQSCKTTEDDPSSSSRDITTCKHKSDLQYMPRRSTSPASQQKAVNGNSSHQKDISSKIDGFSLKSKPPNSPIIDDGSTLVSSDDLMVGNRMFRCIDSGKLCEIWACCMGRCHSKTLRQLLHNHGKLVSICEVEGVLVAYVAFGDVDIKLRAERFLKSITNSMEMVLSRHVEVRIVHLPDAEVVNEKEQRNILAEGDGVRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGIDGVDPLESKDSTNFASHLHWEDDLNNEVKILSAKNGRNVQMDPIGKRADRYPMSPSLLHDSSLATISGKDNLGYESAPGAGCCGFLCWNNSKPRSVVTVKGTPVGARKVGRFALFGECGKPKRKERRR 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1642g00012 1216 FunFam DNA polymerase III subunit gamma/tau 649 711 - -
Gabi1642g00012 1216 Coils Coil 784 811 - -
Gabi1642g00012 1216 MobiDBLite consensus disorder prediction 825 839 - -
Gabi1642g00012 1216 MobiDBLite consensus disorder prediction 867 891 - -
Gabi1642g00012 1216 Pfam DNA polymerase III, delta subunit 487 648 - -
Gabi1642g00012 1216 MobiDBLite consensus disorder prediction 32 67 - -
Gabi1642g00012 1216 Pfam DNA polymerase III subunits gamma and tau domain III 702 822 IPR022754 GO:0003887
Gabi1642g00012 1216 MobiDBLite consensus disorder prediction 103 125 - -
Gabi1642g00012 1216 Gene3D - 650 711 - -
Gabi1642g00012 1216 CDD AAA 486 639 - -
Gabi1642g00012 1216 MobiDBLite consensus disorder prediction 25 82 - -
Gabi1642g00012 1216 Gene3D - 464 646 IPR027417 -
Gabi1642g00012 1216 NCBIfam DNA polymerase III subunit gamma/tau 472 822 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Gabi1642g00012 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 695 IPR027417 -
Gabi1642g00012 1216 CDD HLD_clamp_pol_III_gamma_tau 648 711 IPR045085 -
Gabi1642g00012 1216 SUPERFAMILY post-AAA+ oligomerization domain-like 719 820 IPR008921 GO:0003677|GO:0006260
Gabi1642g00012 1216 MobiDBLite consensus disorder prediction 840 866 - -
Gabi1642g00012 1216 MobiDBLite consensus disorder prediction 825 891 - -
Gabi1642g00012 1216 SMART AAA_5 504 650 IPR003593 GO:0016887
Gabi1642g00012 1216 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 475 894 - -
Gabi1642g00012 1216 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1642g00012 Gabi-Chr1642 133308 140735 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1642g00012 475 763 Core DNA Replication Machinery Family AT1G21690 23.826 3.20e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1642g00012 - - gmx:100814391 1842.01