Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1642g00008 ATGGAACTGTCGAGTCAAGAAGTAGAAATCCCAATCCCAATCCCAATAAACAGTAGCAGTACTAATTATGGTGGGGGACATGGTAATGGGCATGGAGAGGGACATGGGCACATGATTCATCATGACCTTCCTCCACACCAAAACCCTTCAAATGGCTCAGATCATGGACATGGACATGGACATGGACCCGGACCCTACAAGAAAGTGGTGAGATATAGAGAATGCCTAAAGAATCATGCAGCAGCCATGGGAGGGAATGCCACGGATGGTTGTGGTGAGTTCATGCCAAATGGAGAAGAAGGGACCATAGAAGCACTCAACTGCTCTGCCTGCCATTGTCACAGAAACTTCCACAGAAAAGAAGTAGAAGGTGAGCCATCTTCATATACCTCACAGTCACATTTCAGCAGGAAATTCATTTTAGGACATCATCATCACAAGAACATCCTCCCTCCTGAGGCACTCGTTGGCTACCCTACACCTAACATTCTACCATCAAGAAGTGTCCCACCCCACCAGATGATATTTCCCTACAACATTGGATCCCTTCCTTCTGAATCTGATGAATTACAAGAAGAGCATGGTGGTGGAACTGGAACTGGAACTGGAATAGTGGCTAGACCTACACAGCTAGTGAAGAAAAGGTTCAGGACAAAGTTCACACAGGAGCAGAAGGAGAAAATGCTCAACTTTGCTGACAAGGTCGGGTGGAAAATTCAGAAGCAAGAGGAATCCGTTGTGCAACAGTTCTGCCAAGAGATTGGGGTCAAACGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAGCACAATCTGGCCAAAAAGAATCATCCCTCACCTATCTAA 846 0.4586 MELSSQEVEIPIPIPINSSSTNYGGGHGNGHGEGHGHMIHHDLPPHQNPSNGSDHGHGHGHGPGPYKKVVRYRECLKNHAAAMGGNATDGCGEFMPNGEEGTIEALNCSACHCHRNFHRKEVEGEPSSYTSQSHFSRKFILGHHHHKNILPPEALVGYPTPNILPSRSVPPHQMIFPYNIGSLPSESDELQEEHGGGTGTGTGIVARPTQLVKKRFRTKFTQEQKEKMLNFADKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNHPSPI 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1642g00008 281 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 71 122 IPR006456 -
Gabi1642g00008 281 Gene3D - 206 275 - -
Gabi1642g00008 281 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 72 121 IPR006456 -
Gabi1642g00008 281 FunFam Zinc-finger homeodomain protein 2 203 274 - -
Gabi1642g00008 281 NCBIfam homeobox domain, ZF-HD class 213 269 IPR006455 -
Gabi1642g00008 281 MobiDBLite consensus disorder prediction 1 65 - -
Gabi1642g00008 281 SUPERFAMILY Homeodomain-like 212 274 IPR009057 -
Gabi1642g00008 281 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 272 - -
Gabi1642g00008 281 MobiDBLite consensus disorder prediction 11 26 - -
Gabi1642g00008 281 Pfam ZF-HD protein dimerisation region 70 122 IPR006456 -
Gabi1642g00008 281 MobiDBLite consensus disorder prediction 185 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1642g00008 Gabi-Chr1642 93456 95650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1642g00008 1 277 ZF-HD Transcription Factor Family AT1G14440 47.727 1.18e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi1642g00008 ZF-HD_dimer 3.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1642g00008 - - qsa:O6P43_031434 374.4