Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1640g00001 ATGGCTTGTAAAAGTTCAATTATCTCTCACAAATTGAGTAAATATGATTTGGGTGATCTAGAATGGACCAATAGTATTCCAGAGTGTCCAGTATACCATCCATCAGAGCAGGAGTTTGAGAATCCTTTAGTTTATCTACACAAGATTGCTCCTCAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCTGCCTTGAATCCTGCTGGTTCTGTCTTAATGAATGAGAAGAGGGACTTCAAGTTTGAAACAATTGTACAGCCTCTTCGGCTATCTAAATGGAATGATGAGAAGGATATAATAACCTTTTCTATGAGAGGAAGAAAATATACATATCATGAATTTGAAGCTCTAGCAAACAAGGTCTTTTTCAGTAGATTTTGCAGTTCTGAAGGTCTTCCTTGTTCATATGTGGAAAAAGAGTTCTGGCGTGAGATGGTGCATAAAGATAAAGGAACAGTTGAGTATGGAATCAATGTTGAGGGTAGTGCCTTTTCATGTGATCCTCATGACAGGCTTGGAACAAGCAAATGGAATTTGCAGAATTTCTCACGGCTGTTGCAGTCCCCATTGCGTTTAGTTGACAAGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCATCACTCTGGTGCAAATAAAACTTGGTATGGGGTACCTAGCTATGCAGCCTCTCAATTTGAAAAGACTATCTTACATCATGTGTATTGCAATAAGATCTTAACAAAACAAGGAGAGGATGAAGCATTCAGATTTCTTGCACATAAAACAACCATGTTCCCTCCAAATGTCTTGTTACAACATGATGTGGCAGTTTACAAGGCTGTGCAGAAGCCAGGAGAGTTTGTCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTATTGGTGATTGGTTTCCACTTGGAGCTGCAGCTAGCAGGCGTTATGCACATCTTAAAATGTTGCCTATGATTCCTTATGAGGAACTACTTTGTAAAGAGGCAATGCTGGTTTACAAGTCCTCAAAAGTCAGAAGTTCCAAGAACAAACCTGAAGACATGGCATCTTATCATGCTATTGTGCTGTCTTTCTTGCATCTTATGCAATTTTATAAGGCATCACTATTGCGATTGAATAGTCCAAGAAAATTGTCAAGCTCTTCAAATACATTAGGTTCTCTGATATGCAGCCTTTGCCATAAGGATTGTTATGTAGCTTACTTGCAGTGCAAGTACTGCTATTCTCATCCAATTTGTCTTTTTCATGACATTGCATCACAGACTTGTTTATGTGGGAGAAAATATACTATTTTTAAGAGGAATGACATGTTGGCACTGGAAGATGCAGCCAAAAGTTTTGAGCAGAATAATCCTTGGCATGAAGAAAAAAGTCCACGAGGAATTGCTAATTCTCAAGCAGCAGCATCTAAACTGAAAACAAGAGTAACGGACAGCATTAAGCACAATGTTGAAAAGAATAACAAGACAACAATGAAGCATTGTAGAAACAATGGACCTCCATCAGTGAAGAGAACCAAGAGACCACGAATCATTTATAAATCGAGAAAAAGTGAATCAAAACTGATCGAATGA 1683 0.3809 MACKSSIISHKLSKYDLGDLEWTNSIPECPVYHPSEQEFENPLVYLHKIAPQASKYGICKIVSPIAALNPAGSVLMNEKRDFKFETIVQPLRLSKWNDEKDIITFSMRGRKYTYHEFEALANKVFFSRFCSSEGLPCSYVEKEFWREMVHKDKGTVEYGINVEGSAFSCDPHDRLGTSKWNLQNFSRLLQSPLRLVDKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSYAASQFEKTILHHVYCNKILTKQGEDEAFRFLAHKTTMFPPNVLLQHDVAVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAAASRRYAHLKMLPMIPYEELLCKEAMLVYKSSKVRSSKNKPEDMASYHAIVLSFLHLMQFYKASLLRLNSPRKLSSSSNTLGSLICSLCHKDCYVAYLQCKYCYSHPICLFHDIASQTCLCGRKYTIFKRNDMLALEDAAKSFEQNNPWHEEKSPRGIANSQAAASKLKTRVTDSIKHNVEKNNKTTMKHCRNNGPPSVKRTKRPRIIYKSRKSESKLIE 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1640g00001 560 ProSiteProfiles JmjC domain profile. 177 347 IPR003347 -
Gabi1640g00001 560 PANTHER LYSINE-SPECIFIC DEMETHYLASE 21 527 - -
Gabi1640g00001 560 Pfam jmjN domain 30 62 IPR003349 -
Gabi1640g00001 560 SUPERFAMILY Clavaminate synthase-like 149 364 - -
Gabi1640g00001 560 MobiDBLite consensus disorder prediction 522 560 - -
Gabi1640g00001 560 SMART JmjN_1 28 69 IPR003349 -
Gabi1640g00001 560 FunFam Lysine-specific demethylase isoform A 24 374 - -
Gabi1640g00001 560 Gene3D Cupin 29 391 - -
Gabi1640g00001 560 Pfam JmjC domain, hydroxylase 207 330 IPR003347 -
Gabi1640g00001 560 ProSiteProfiles JmjN domain profile. 29 70 IPR003349 -
Gabi1640g00001 560 SMART cupin_9 174 347 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1640g00001 Gabi-Chr1640 34461 37570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1640g00001 12 484 JUMONJI Transcription Factor Family AT2G34880 30.939 2.35e-59 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi1640g00001 JmjC 1e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1640g00001 - - gmx:100809650 924.465