Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi163g00001 ATGGCATCTTCAGAATCACATTCAATACTAGCACGCGACAACCGCCATGGCCTCTCAATGTTTGTACACTACAACTTCCGTGTCTCTCCCACAACATCAACATCAATATTCTTTCATAATGCGAATGACCAACAGCAACACCGTCCCAACCTCATGGTCACGTCCACTGATAGGTTCAAATTCCGCATCAATGCTTTTTTTCGCTTATTTGATTCAATCTCCAACGCACTTATGAACACAACAATGCTCCATCCTTGTCAAGAAATAGCTTGCCAAACCTTTTTCCAAGAAGGTCAAGATTTTCTTTGGTCCCATTTATCACACCCAAACATTCCCTTTAGAATGCTTGATATGATAATTCCAAGAATCATGAGTAGAGTTCAACAACTATTGGACCTCAACCTTGCATTTGCAATAACTTGGGATTCGGGTTATCGTGTGTTCCCTTTGGAAGTGTCCTTTATCGTGGACTACGAGGAATACGTTGTCATAAATACAATAATGGAAGAGTCAGCAGAAGATTTTAGAATGATTCCAGCTTCCAATAATGTTATCCATTCTCTGAAGAAGTTCAAGGTTACGAAACAGGATGAGTACTGTACTATCTGCATGGAAGAGTTCGACGTGAGTGATGATAATGAAGGCAAAGAAGTCTCCGCAATGCCCTGCGATCACGTGTTTCACCAACAATGTATTGTGCAATGGCTGCAAACTAGTCATATGTGTCCCTTGTGTCGCTATCCTATGCCCATTGCCAACAATATATGA 768 0.4115 MASSESHSILARDNRHGLSMFVHYNFRVSPTTSTSIFFHNANDQQQHRPNLMVTSTDRFKFRINAFFRLFDSISNALMNTTMLHPCQEIACQTFFQEGQDFLWSHLSHPNIPFRMLDMIIPRIMSRVQQLLDLNLAFAITWDSGYRVFPLEVSFIVDYEEYVVINTIMEESAEDFRMIPASNNVIHSLKKFKVTKQDEYCTICMEEFDVSDDNEGKEVSAMPCDHVFHQQCIVQWLQTSHMCPLCRYPMPIANNI 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi163g00001 255 SMART ring_2 200 245 IPR001841 -
Gabi163g00001 255 SUPERFAMILY RING/U-box 193 251 - -
Gabi163g00001 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 252 IPR013083 -
Gabi163g00001 255 ProSiteProfiles Zinc finger RING-type profile. 200 246 IPR001841 -
Gabi163g00001 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 65 250 - -
Gabi163g00001 255 CDD RING-H2_PA-TM-RING 200 246 - -
Gabi163g00001 255 Pfam Ring finger domain 199 246 IPR001841 -
Gabi163g00001 255 SMART ringv_2 199 246 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi163g00001 Gabi-Chr163 5353 6120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi163g00001 170 250 C3H Transcription Factor Family AT1G18760 39.286 1.61e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi163g00001 - - gmx:102665306 134.035