Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1639g00006 ATGCCTGTTGATTTTGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTTTCTTCCTCTGGCAATCACATAGCACCTCCAGAACCCACTACCAAGAAAAAACGAAACCTTCCAGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTATCTCCGAAGACCCTTTTGGCGACGAACCGATTCGTGTGTGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAACTTCATCGAAGGGGTCACAATCTGCCATGGAAGCTGAGGCAAAGGTCGAGCAAAGAGGTGAGAAAGAGGGTCTACGTTTGTCCTGAACCAACGTGCGTTCACCATAACCCTTCAAGAGCATTGGGTGATCTCACTGGAATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCTGTTCAATCAGATTGGAAGGCTCACTCCAAGGTTTGCGGCACCAGAGAGTACAAATGCGATTGTGGAACTCTGTTTTCGAGGAGGGATAGCTTCATCACGCATAGAGCTTTTTGCGATGCTTTAGCAGAAGAGAGTGCAAGATCTCAGCCTCAGACTTTTGTGAAGGCTAATTCAGAGTCTGACTCCAAGGTTTTCACTGGTGATTCATCGCCGCCTGCGGCGGCTCCGGCGCCGGCAGCGGCTACTACTACTACTCAGTCAAACAGTGTCATGTCCTCTCCTTTGCAGACACAAAACCTAGAGTTGCCAGAAAACCCCGAACAAATCATGGAGGAATCACAAGCTACCACTGCTTTAAATGGGAGCTGTAGCAGCAGCACCAACTCAACAAGCAATAGCGGTGCTACGAGTACTACTAGCAGTAGTGTTTTTGCAAGTTTGTTTGCTTCCTCAACAGCATCAGGGAACCTACAATCTCAAACACCAGCATTCACTGACCTAATTAGGGCCATGGGGTGTCCAGATTCTGGTCCTTCATCATCGGAGGCAATTTCTCTCTGCCTCTCCACCAATCATGGATCATCAATTTTTGAAACAGGAGGGCAGGAGTGCCGTCAATATGCCCTGCCATTACCACCACCACCGCAACCGGCTATGTCTGCTACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTTCAGCTGCCACAAATGCCTCTTTGCTTCGAGGGTTTGGAATTGTATCATCTTCGGCTGCATCTTCATCAGGCCAGCAAGATAGCCTGCAATGGGGTCAGGGGCAAGTAGAACCAGATAGTGCTTCTATTCCTGCAGGGCTTGGACTTGGGCTTCATTGTGATGGTGGCTCTGGATTGAAGGAATTGATGTTGGGGAATCCTTCCATGTTTGGTCCTAAACAGACCACTCTTGATTTTCTAGGATTGGGTATGGCTGCTGGTGGCACTGCTGGTGGAGGCTTATCTGCACTCATCACATCTATTGGCAGTGGTCTTGATGTTACTGCTGCAGCTGCATCCTTTGGTAATGGAGAGTTCTCAGGCAAAGATATTGGGAGGAGCTCGTGA 1524 0.4888 MPVDFDNVSTASGEASVSSSGNHIAPPEPTTKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPQTFVKANSESDSKVFTGDSSPPAAAPAPAAATTTTQSNSVMSSPLQTQNLELPENPEQIMEESQATTALNGSCSSSTNSTSNSGATSTTSSSVFASLFASSTASGNLQSQTPAFTDLIRAMGCPDSGPSSSEAISLCLSTNHGSSIFETGGQECRQYALPLPPPPQPAMSATALLQKAAQMGSAATNASLLRGFGIVSSSAASSSGQQDSLQWGQGQVEPDSASIPAGLGLGLHCDGGSGLKELMLGNPSMFGPKQTTLDFLGLGMAAGGTAGGGLSALITSIGSGLDVTAAAASFGNGEFSGKDIGRSS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1639g00006 507 SMART c2h2final6 61 83 IPR013087 -
Gabi1639g00006 507 SMART c2h2final6 102 132 IPR013087 -
Gabi1639g00006 507 SMART c2h2final6 137 157 IPR013087 -
Gabi1639g00006 507 MobiDBLite consensus disorder prediction 259 283 - -
Gabi1639g00006 507 MobiDBLite consensus disorder prediction 226 240 - -
Gabi1639g00006 507 FunFam protein indeterminate-domain 12-like 40 108 - -
Gabi1639g00006 507 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Gabi1639g00006 507 Gene3D Classic Zinc Finger 115 195 - -
Gabi1639g00006 507 MobiDBLite consensus disorder prediction 196 214 - -
Gabi1639g00006 507 Gene3D Classic Zinc Finger 41 107 - -
Gabi1639g00006 507 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Gabi1639g00006 507 MobiDBLite consensus disorder prediction 1 43 - -
Gabi1639g00006 507 MobiDBLite consensus disorder prediction 196 240 - -
Gabi1639g00006 507 MobiDBLite consensus disorder prediction 9 26 - -
Gabi1639g00006 507 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 468 IPR031140 -
Gabi1639g00006 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Gabi1639g00006 507 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1639g00006 Gabi-Chr1639 197350 200353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1639g00006 1 507 IDZ Gene Family AT5G66730 59.738 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1639g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1639g00006 K25869 - gmx:100806404 741.495