Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1639g00003 ATGGGAACTGGAGAAGACAGCACAGCTAAACCTCCTAAAAAATCTTCGTCAACTCAGGAGCTACCGACAGCACCTTCATATCCTGATTGGTCAACCTCCATGCAGGCCTATTATGCTCCTGGAGGCACTCCACCTCCCTTTTTTGCCACAACTGTTGCTTCCCCAACTCCCCATCCCTATTTGTGGGGAAGCCAGCATTTAATGCCACCATATGGGACTCCAGTCCCATATCCAGCTTTATACCCTCCTGGGAGTGTCTATGCTCATCCTGGCATGGCAATGACGCCAAGTGCTATGCAGCAAAGTACAGAGTATGAAGGGAAGGTACCTAATGGAAAAGATGGGGATTCATCCAAAAAATTGAAGGGAACTTCTGCAAATACAGGTTCCAAAGCAGGAGAGAGTGGAAAAGCAGGCTCAGGTTCAGGCAATGATGGCATCTCACAAAGTGCTGAAAGTGGTTCCGAGGGTTCATCAAATGCTAGTGATGAGAATACTAACCAACAGGAATCAGCTACAAACAAGAAGGGAAGCTTTGACCAGATGCTTGTTGATGGAGCCAATGCACAGAACAATTCTGCTGTGCCTGGAAATCCCGTTGTCTCAGTGGCTGCAACAAATCGTAATATTGGAATGGACTTATGGAATGCATCTTCTTCTGGTACAGAAGCTGCAAAAATGAGACATAGTCAATCTAGTGCCCCGGGAGCTGTTGCTCCTTCAACCATAATGGGACGTGAAGTTGCACTTGGTGAACAGTGGGTACAAGATGAACGTGAGCTGAAAAGACAGAAGAGAAAACAGTCCAACAGAGAGTCAGCTAGGAGGTCAAGACTACGAAAACAGGCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAGACACTGGGAAGTGAGAATCGAACTCTCAGGGAAGAGCTTCAGAGACTTTCCGAAGAATGCGAGAATATTACATCTGAAAATAATTCTATCAAGGAAGAGTTGGAACGGTTATGTGGGCCAGAAGCAGTTGCTAACCTTGGATGA 1023 0.4633 MGTGEDSTAKPPKKSSSTQELPTAPSYPDWSTSMQAYYAPGGTPPPFFATTVASPTPHPYLWGSQHLMPPYGTPVPYPALYPPGSVYAHPGMAMTPSAMQQSTEYEGKVPNGKDGDSSKKLKGTSANTGSKAGESGKAGSGSGNDGISQSAESGSEGSSNASDENTNQQESATNKKGSFDQMLVDGANAQNNSAVPGNPVVSVAATNRNIGMDLWNASSSGTEAAKMRHSQSSAPGAVAPSTIMGREVALGEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQKRVETLGSENRTLREELQRLSEECENITSENNSIKEELERLCGPEAVANLG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1639g00003 340 Coils Coil 271 326 - -
Gabi1639g00003 340 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 260 323 IPR004827 GO:0003700|GO:0006355
Gabi1639g00003 340 Pfam bZIP transcription factor 258 320 IPR004827 GO:0003700|GO:0006355
Gabi1639g00003 340 Pfam G-box binding protein MFMR 1 92 IPR012900 -
Gabi1639g00003 340 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 265 280 IPR004827 GO:0003700|GO:0006355
Gabi1639g00003 340 MobiDBLite consensus disorder prediction 121 198 - -
Gabi1639g00003 340 MobiDBLite consensus disorder prediction 98 198 - -
Gabi1639g00003 340 Gene3D - 261 317 - -
Gabi1639g00003 340 CDD bZIP_plant_GBF1 263 313 IPR045314 GO:0003700|GO:0006355
Gabi1639g00003 340 SMART brlzneu 258 322 IPR004827 GO:0003700|GO:0006355
Gabi1639g00003 340 MobiDBLite consensus disorder prediction 1 75 - -
Gabi1639g00003 340 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 336 IPR044827 GO:0003700|GO:0006355|GO:0043565
Gabi1639g00003 340 MobiDBLite consensus disorder prediction 258 281 - -
Gabi1639g00003 340 MobiDBLite consensus disorder prediction 9 38 - -
Gabi1639g00003 340 SUPERFAMILY Leucine zipper domain 261 317 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1639g00003 Gabi-Chr1639 124180 129961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1639g00003 1 339 bZIP Transcription Factor Family AT4G36730 52.907 2.02e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi1639g00003 MFMR 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1639g00003 K09060 - gmx:778191 500.745