Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1639g00001 ATGAATCATCAACCTATCGAAGACCACATGATGCTTTTTTCCCAGCTCTACCCTGATGCATTAACTCAAATAACTCGTCAACAAGGGGTGAAAAAGCCACGACGCAGCCGAAGTAAAAAGAATAAAAGAGGAGAAAATGGGGCTGTGGGCGCCATCAAGAAGAGAAAGCTCACTTTAGAGCAAGCTAATATTCTTGAGCAAAACTTCGGCAGTGAGCATAAACTTGAGTCTAAAAGGAAGGACCGGCTCGCATTGGAGCTTGGTTTGGATCCTCAACAAGTTGCAGTGTGGTTTCAAAATAAAAGATCTCGTTGGAAGAACAAAAAATTGGAGGAAGAGTACTCTAATCTCAAAAATGCCCATGAAACAACCACGCTCGAGAAATGCCACCTTGAGACTGAGGTGCTGAAGCTCGAGGAGCAGCTTTTGGAGGCAAAGAAGGAGATTCAACGGCTACTAGATTGTGCTAATAGAGCTCCAAGCAACAGCTTCAGTTCCTCACAGACACAGTCAAAGGAAGCTGTGAACCCACCATTTCTTGGGGAGTTTAGGGTGGAAGAATATGATGATGGTGATATGTTTTACATTCCAGAGATCCCTTACATCAATGGCATGGAATGGATTAATTATATGTCCATGTGA 642 0.433 MNHQPIEDHMMLFSQLYPDALTQITRQQGVKKPRRSRSKKNKRGENGAVGAIKKRKLTLEQANILEQNFGSEHKLESKRKDRLALELGLDPQQVAVWFQNKRSRWKNKKLEEEYSNLKNAHETTTLEKCHLETEVLKLEEQLLEAKKEIQRLLDCANRAPSNSFSSSQTQSKEAVNPPFLGEFRVEEYDDGDMFYIPEIPYINGMEWINYMSM 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1639g00001 213 Gene3D - 44 117 - -
Gabi1639g00001 213 SUPERFAMILY Homeodomain-like 53 117 IPR009057 -
Gabi1639g00001 213 Coils Coil 100 127 - -
Gabi1639g00001 213 Coils Coil 135 159 - -
Gabi1639g00001 213 SMART HOX_1 51 112 IPR001356 GO:0003677
Gabi1639g00001 213 Pfam Homeodomain 54 107 IPR001356 GO:0003677
Gabi1639g00001 213 MobiDBLite consensus disorder prediction 26 49 - -
Gabi1639g00001 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 168 IPR045224 GO:0003700
Gabi1639g00001 213 FunFam homeobox-leucine zipper protein ATHB-40 47 116 - -
Gabi1639g00001 213 ProSiteProfiles 'Homeobox' domain profile. 53 108 IPR001356 GO:0003677
Gabi1639g00001 213 CDD homeodomain 53 109 IPR001356 GO:0003677
Gabi1639g00001 213 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Gabi1639g00001 213 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Gabi1639g00001 213 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1639g00001 Gabi-Chr1639 79156 81183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1639g00001 1 209 Homeobox Transcription Factor Family AT4G36740 51.598 1.41e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gabi1639g00001 Homeodomain 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1639g00001 K09338 - gmx:100809616 269.626