Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1634g00008 ATGGCTGGTAAAAGTTCAATTACTCATATCTCCCAGAAATTGAGTAAATATGATTTGGCAGATCTAGAATGGACCAATAGGATTCCAGAGTGTCCAGTATACCACCCATCAGAGCAGGAGTTTGAGCATCCTTTAGTTTATCTGCAGAAGATTGCTACTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTTCTGCCTCTTATCCTGCTGGTTCTGTCTTAATGAATGAGAAGAGGGACTTCAAGTTTGAAACAATTGTACAGCCTCTTAGGCTATCTAAATGGAATGAGAAGGATATAATAACATTTTCTATGAGAGGAAGAAAATATACATATCATGAATTTGAAGCTCTAGCAAACAAGGTCTTTTTCAGTAGATTTTGCAGTTCTGAAGGTCTTCCTTCTTCATATGTGGAAAAGGAGTTCTGGAATGAGATGGCGCATGGAGTTAAGGGAACAGTTGAGTATGGAGTCAATATTGAGGGTAGTGCCTTTTCATGTGATCCTCATGACAGGCTTGGAACAAGCAAATGGAATTTGCAGAATTTCTCACGGCTGCTGCAGTCCCCATTGCGTTTAGTTGACAAGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCACCACTCAGGTGCAAATAAAACTTGGTATGGGGTGCCTAGCTATGCAGCCTCTCAATTTGAAAAGACTGTCTTACATCATGTGTATTCCAATAAGATCATAACAAAACAAGGAGAGGATGGAGCATTCAAATTTCTTGCACATAAAACAACCATGTTCCCTCCAAATGTCTTGTTACAACATGATGTGGCAGTTTACAAGGCTGTGCAGAAGCCAGGAGAGTTTGTCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTATTGGTGATTGGTTTCCACTTGGAGCTGCAGCTAGCAGGCGTTATGCACATCTTAAAATGTTGTCTATAATTCCTTATGAGGAACTACTTTGTAAAGAGGCAATGCTGGTTTACAAGTCCTCAAAAGTCAGAAGTTCCAAGAACAAACCTGAAGACATGGCATCTTATCATGCTATTGTGCTGTCTTTCTTGCATCTTATGCAATTTTATAAGGCATCACTATTGCGATTGAATAGTCCAAGAAAATTGTCAAGCTCTTCAAATACATTAGGTTCTCTGATATGCAGCCTTTGCCATAAGGATTGTTATGTAGCTTACTTGCAGTGCAAGTACTGCTATTCTCATCCAATTTGTCTTTTTCATGACATTGCATCACAGACTTGTTTATGTGGGAGAAAATATACTATTTGTAAGAGGAATGACATGTTGGCACTGGAAGATGCTGCCAAAAGTTTTGAGCAGAATAATCCTTGGCATGAAGAAAAAAGTCCAAGAGGAATTGCTAATTCTCTAGGAGCAGCAGCATCTAAACTGAAAACAAGAGTAACGGACAGCATCAAGGACAATGTTGAAAAGAATAACAAGACAACAATGAAGCATTGTAGAAATAATGGACCTCCATCAGTGAAGAGAAACAAAAGACCACGAATCACCCTCACGTCAATTTGA 1665 0.388 MAGKSSITHISQKLSKYDLADLEWTNRIPECPVYHPSEQEFEHPLVYLQKIATEASKYGICKIVSPISASYPAGSVLMNEKRDFKFETIVQPLRLSKWNEKDIITFSMRGRKYTYHEFEALANKVFFSRFCSSEGLPSSYVEKEFWNEMAHGVKGTVEYGVNIEGSAFSCDPHDRLGTSKWNLQNFSRLLQSPLRLVDKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSYAASQFEKTVLHHVYSNKIITKQGEDGAFKFLAHKTTMFPPNVLLQHDVAVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAAASRRYAHLKMLSIIPYEELLCKEAMLVYKSSKVRSSKNKPEDMASYHAIVLSFLHLMQFYKASLLRLNSPRKLSSSSNTLGSLICSLCHKDCYVAYLQCKYCYSHPICLFHDIASQTCLCGRKYTICKRNDMLALEDAAKSFEQNNPWHEEKSPRGIANSLGAAASKLKTRVTDSIKDNVEKNNKTTMKHCRNNGPPSVKRNKRPRITLTSI 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1634g00008 554 FunFam Lysine-specific demethylase isoform A 26 375 - -
Gabi1634g00008 554 Gene3D Cupin 31 392 - -
Gabi1634g00008 554 Pfam jmjN domain 32 64 IPR003349 -
Gabi1634g00008 554 ProSiteProfiles JmjC domain profile. 178 348 IPR003347 -
Gabi1634g00008 554 SMART JmjN_1 30 71 IPR003349 -
Gabi1634g00008 554 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Gabi1634g00008 554 MobiDBLite consensus disorder prediction 526 554 - -
Gabi1634g00008 554 SMART cupin_9 175 348 IPR003347 -
Gabi1634g00008 554 Pfam JmjC domain, hydroxylase 208 331 IPR003347 -
Gabi1634g00008 554 SUPERFAMILY Clavaminate synthase-like 138 365 - -
Gabi1634g00008 554 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1634g00008 Gabi-Chr1634 91243 94350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1634g00008 14 457 JUMONJI Transcription Factor Family AT2G34880 31.311 1.40e-57 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi1634g00008 JmjC 1.7e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1634g00008 - - gmx:100809650 914.064