Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1631g00023 ATGCTAATGGGCGCGCGCTCTGCTTCGCTTGTGCGCGCACCTGCAGCATCAAATAATGTCAAGTTGTCGTTCACCTTTGTTGTTTTGGTATTGCTATCAATAATATCATCATGTTCATGCGGCGGCTCTTCAGATGCTGAGGCGCTCTTGAAGTTCAAGGATTCATTGAAGAATGTGGTAGCCCTTAGCAGTTGGGATCCATCCATAAACCCAAAGCCACCTTGCAATGGCAACATTTCCAATTGGGTTGGCCTGTTTTGTTTGAATGACAAGGTTTGGGGGTTGCGACTTGAGAACATGGGTCTAACAGGCAACATTGATGCGGGATCCCTCGCTTTAATGTCCGCTCTTCGGACCATTAGCCTAATGAACAATACCTTTGTGGGTCCCTTGCCCAACATCAAGTTGCTGCCAAATTTGAAAGCCCTCTTCTTGTCCTACAACCATTTCTCAGGGAACATACCTGACGATGCATTTGCCGGTTTGCTTAAGCTGAGGAAATTGTATTTGGCCAACAACGAGTTTACCGGCAAAATTCCTTCCTCCCTTGCTACCTTGCCTATTCTGCTCGTCCTTAGGCTCGACGCCAACAAGTTTCAAGGTCAAATCCCTGATTTTCAACACAACAATTTGAAGATCATCAACCTCTCTAACAATGAGTTAGAGGGTCCCATCCCGGCCAATCTAACCACCTTCGATGCATCCTCCTTTAGAGGCAACACACGTCTATGCGGGCCACCTCTGACGAATCGGTGTCAAGCAACCGTGGATGAGACTCCAGCAAGAATGCGCATTCTGAAAATTTTACTTATAATATTCATGATAGCATTCATACTAGCCATCCTGGTTGCAGTCTTGGTCATACGCCGCGTGAGGTTCAGGTCCCAATCCCAATCCCAATCCGAATCCGAATCCCACTTTAAGGCCTCAACGTTCCAGGCCTCCAACAAATACGTTACTCCCACTTATGTCAAAACCAAAAGCCTAGCGGAACACTATGATGCAGTTCCTAAGGATCATGGTCATGGACATTCAAAGAGGGGGGAACAAGGCAAGCTGACATTCCTCAGGCATGACAGACTCAAGTTTGATTTACAGGATTTGCTAAGGTCCTCTGCTGAAATTCTTGGCAGTGCCGCTTTTGGGTCTTCCTACAAGGCTGTGGTTCTCGACGGCCAAGCCGTGGTTGTCAAGAGGTACAAACAAATGAACAATGTGCCCAGAGAGGAGTTCCATGAGCACATGAGAAGACTTGGCAACCTCAACCATCCCAATCTTCTCCCTCTCTTGGCCTATTATTATAGGAAAGAAGAGAAACTCTTGCTCACTTCCTTTGTTGACAACGGTTGCTTGGCCAGCAATCTTCATGGTAATCATAACTATCAAAAGCCTGGGCTTGATTGGCCAACCCGCTTGAAAATCATAAAAGGTGTAGCGAGGGGTTTGGCTTACCTATACAATGCACTCCCAAGCGTGATTGTGCCTCATGGTCACCTCAAATCTTCAAATGTGCTTTTGGATGAATGTTTTGAGCCTCTACTAACTGATTATTCCCTGAGTCCTATGATCAACCTTGACCATGCTCAACAAATCATCATGCCTTACAAATCACCCGAGTACGCTCAACTTGGACGCATTACAAAGAAGACTGATGTCTGGAGTCTAGGAATTCTCATACTTGAGATCTTGACTGGCAAATTCCCAGAGAACTATCTCACACACAGGCATAATCCTGATTCTGACATAGCCAGTTGGGTCAATATCATGATTACCGAGAAACGCACCAGTGATGTCTTTGACGTTGAGATGACAGGAATCGGAAACAGTAAAGCTGAATTGCTCAAACTCTTAAAGATTGGCTTGAGTTGTTGTGAGGAGAATGTGGAAAGAAGGCTCGATATCAAGGAAGCTCTTGAGCAGATTGAAGACTTGAAAGAGGGTGAAACTGATGGAGATCAATACTCTTCAACTCTCATCACCACAGAAAGGGATGCTTATAGAGCTGTCTGA 2010 0.4562 MLMGARSASLVRAPAASNNVKLSFTFVVLVLLSIISSCSCGGSSDAEALLKFKDSLKNVVALSSWDPSINPKPPCNGNISNWVGLFCLNDKVWGLRLENMGLTGNIDAGSLALMSALRTISLMNNTFVGPLPNIKLLPNLKALFLSYNHFSGNIPDDAFAGLLKLRKLYLANNEFTGKIPSSLATLPILLVLRLDANKFQGQIPDFQHNNLKIINLSNNELEGPIPANLTTFDASSFRGNTRLCGPPLTNRCQATVDETPARMRILKILLIIFMIAFILAILVAVLVIRRVRFRSQSQSQSESESHFKASTFQASNKYVTPTYVKTKSLAEHYDAVPKDHGHGHSKRGEQGKLTFLRHDRLKFDLQDLLRSSAEILGSAAFGSSYKAVVLDGQAVVVKRYKQMNNVPREEFHEHMRRLGNLNHPNLLPLLAYYYRKEEKLLLTSFVDNGCLASNLHGNHNYQKPGLDWPTRLKIIKGVARGLAYLYNALPSVIVPHGHLKSSNVLLDECFEPLLTDYSLSPMINLDHAQQIIMPYKSPEYAQLGRITKKTDVWSLGILILEILTGKFPENYLTHRHNPDSDIASWVNIMITEKRTSDVFDVEMTGIGNSKAELLKLLKIGLSCCEENVERRLDIKEALEQIEDLKEGETDGDQYSSTLITTERDAYRAV 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1631g00023 669 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 29 646 IPR046959 -
Gabi1631g00023 669 Gene3D Transferase(Phosphotransferase) domain 1 446 664 - -
Gabi1631g00023 669 FunFam pollen receptor-like kinase 1 339 445 - -
Gabi1631g00023 669 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 132 225 - -
Gabi1631g00023 669 Pfam Leucine rich repeat N-terminal domain 44 87 IPR013210 -
Gabi1631g00023 669 Pfam Protein kinase domain 373 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1631g00023 669 Gene3D Phosphorylase Kinase; domain 1 339 445 - -
Gabi1631g00023 669 FunFam Pollen receptor-like kinase 1 446 655 - -
Gabi1631g00023 669 Pfam Leucine rich repeat 138 199 IPR001611 GO:0005515
Gabi1631g00023 669 Pfam Leucine Rich Repeat 210 229 IPR001611 GO:0005515
Gabi1631g00023 669 SUPERFAMILY L domain-like 72 231 - -
Gabi1631g00023 669 Gene3D Ribonuclease Inhibitor 160 254 IPR032675 -
Gabi1631g00023 669 Gene3D Ribonuclease Inhibitor 44 159 IPR032675 -
Gabi1631g00023 669 ProSiteProfiles Protein kinase domain profile. 370 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1631g00023 669 SUPERFAMILY Protein kinase-like (PK-like) 373 640 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1631g00023 Gabi-Chr1631 148484 151351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1631g00023 14 660 Receptor kinase-like Gene Family AT5G35390 49.096 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi1631g00023 Pkinase 3.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1631g00023 - - gmx:100801053 944.88