LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1631g00022	ATGGATAACACTACCAAAGATCTGTTTCTTACATTCCATTGTTATTGTACACGCAAAGATATACAATGCCTTGATGTCCTACTTGAAGACTCTGACGTGGTGAAAGCAATAACAGAATATGTCTCTTATGCTGCAATTGAGAACTTGGTGGTTGGTGCAACATCAAGGCATGGTTTTATTAGATTTAAGTCATCAAGTACACCAAGCAACATATCAAAGGGGTCGCCAGATTTCTGTACCGTGTTTGTCATTTCTAAGGGGAAAATCTCCTCAGTTAGGAATGCTTCTCGTCCAGCCCCACATACCTCACCACTTCTGAGCCATATATATAATCTAAATAACCAGGATGGAAATCAACCTGAGATGCCCTCTAGACGTATAAATTCGAGAGACAGGACATCAATCAAACCTCACAGCTGGATGGATGAGTCCATTAAGTCACCATTTGCAAGAGGAAGAGACTCGAGTGTAATGTCATGCATGGACTTTGCAGAATCAGATACGGACATATCATTTGTAAGCTCTGAGAGGCCAAGCAGTGGATGTTCATCCTATGTTTATGACTGTATTGACTCGGGCAGAACTTCACGAATTTCTACCAGTTCAGATCATAGAGTTTCTACTAGTTCAGATCGTAGAGTTTCTACCAGTTCAGATCGTAGCTTTGGATCTGTCCGATTGGGACTCAAGTTCCCTGAGTCCGGTTCACCAGATACGTCGTTTTCACATGAAAGCAATAGAACATCGTTTTCATATTCATCACAGAACATGGATGAAGCAGAAACTGATATGAGGAGGCTGAAGCTTGAGTTAAAGCAAACGATGGAAATGTACAGTACAGCATGCAGAGAAGCACTTACAGCACAACAGAAGTTAATGGAGCTGAACAACTGGAGAATTGAGGAAGAAAAAAAAATAGAAGAGACACGATTGGGCGAGGAAGCAGCTCTGGCAATTGCGGAGAAAGAGAAAGCAAGAAGTAAGGCAGCCATGGAAACAGCTGAAGCAGCTAAGAAAATTGCAGAGGTGGAATCACATAGAAGAGCAAGTGTTGAAGTTAAATCTCTTAAAGAAGTAGAGGAAATGAAGAAACTATTGGACAATCTAGCCCAAACTGATGAAAGATATAGGAAATACACTATTGAGGAGATTGAAGCAGCCACGAACTTCTTCTCTGAATCTCTGAAAATCGGGGAAGGAGGTTATGGCCCTGTTTATAACTGTTACCTTGATCACACTCCAGTGGCGGTCAAGGTTCTACGTCCAGATGCTGCTCAAGGGAAGTCACAGTTTCAGCAAGAGGTTGACATACTTAGCTGTATGCGCCACCCTAATATGGTGCTTCTTCTAGGAGCGTGTCCAGAGTATGGCATATTGATATATGAATATATGGCTAATGGAAGCTTAGAAGATTGTCTCTTTCGAAAAAGGAACAGGAGTGTTCTGTCTTGGCAGCTGAGGTTCCGAATTGCTGCAGAGATAGCGACGGGCTTGCTATTCCTCCATCAGACAAAGCCTGAGCCTTTGGTGCATCGTGATCTGAAACCAGGCAACATTTTGTTAGACCAGAATTATGTAACTAAGATTAGTGATGTGGGATTGGCAAGACTTGTCCCTGCTGTAGCTGAAAATGTAACACAATGCTGCATGACATCAGCGGCTGGAACTTTCTGTTATATTGATCCTGAGTATCAGCAAACAGGAATGCTTGGTGTCAAATCCGATGTTTATTCTCTGGGGATCATATTTCTTCAATTATTGACAGGCAAGCCACCAATGGGATTGGCTCACCATGTTGAACAATCTATTGAGAATGACACGTTTGGGGAAATGCTTGACCCATCGATCACTGACTGGCCTCTTGAACAAGCCTTGTGCCTTGCAAAGATAGCTGTCAACTGTGCACAACTCAGGCGAAAAGATCGGCCAGACCTTGGCATAGAGGTGTTGCCAGAGCTCAATAAATTGAGAGAGTTTGCCGAAGAAAATATGAGTCTCATCTTTTTAGGAGGCACTAGTTCTATTGCGCCTTCCCCCAACCACAGTGAAGCTTCCCTGCAACAGGAGGTGATGAGCGACCCGCGGCTTGTACATTCAGGAAGCTCATCAACTCCATCAACGCCCACAGAAGCGAAGTCTTAA	2142	0.4332	MDNTTKDLFLTFHCYCTRKDIQCLDVLLEDSDVVKAITEYVSYAAIENLVVGATSRHGFIRFKSSSTPSNISKGSPDFCTVFVISKGKISSVRNASRPAPHTSPLLSHIYNLNNQDGNQPEMPSRRINSRDRTSIKPHSWMDESIKSPFARGRDSSVMSCMDFAESDTDISFVSSERPSSGCSSYVYDCIDSGRTSRISTSSDHRVSTSSDRRVSTSSDRSFGSVRLGLKFPESGSPDTSFSHESNRTSFSYSSQNMDEAETDMRRLKLELKQTMEMYSTACREALTAQQKLMELNNWRIEEEKKIEETRLGEEAALAIAEKEKARSKAAMETAEAAKKIAEVESHRRASVEVKSLKEVEEMKKLLDNLAQTDERYRKYTIEEIEAATNFFSESLKIGEGGYGPVYNCYLDHTPVAVKVLRPDAAQGKSQFQQEVDILSCMRHPNMVLLLGACPEYGILIYEYMANGSLEDCLFRKRNRSVLSWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVTKISDVGLARLVPAVAENVTQCCMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGKPPMGLAHHVEQSIENDTFGEMLDPSITDWPLEQALCLAKIAVNCAQLRRKDRPDLGIEVLPELNKLREFAEENMSLIFLGGTSSIAPSPNHSEASLQQEVMSDPRLVHSGSSSTPSTPTEAKS	713

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1631g00022	713	PANTHER	OS02G0152300 PROTEIN	2	700	-	-
	Gabi1631g00022	713	Coils	Coil	362	382	-	-
	Gabi1631g00022	713	FunFam	U-box domain-containing protein 51	464	663	-	-
	Gabi1631g00022	713	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	363	463	-	-
	Gabi1631g00022	713	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	509	521	IPR008271	GO:0004672\|GO:0006468
	Gabi1631g00022	713	Coils	Coil	317	337	-	-
	Gabi1631g00022	713	MobiDBLite	consensus disorder prediction	196	223	-	-
	Gabi1631g00022	713	Pfam	Protein kinase domain	393	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1631g00022	713	MobiDBLite	consensus disorder prediction	196	259	-	-
	Gabi1631g00022	713	Gene3D	Phosphorylase Kinase; domain 1	368	463	-	-
	Gabi1631g00022	713	SMART	serkin_6	391	660	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1631g00022	713	MobiDBLite	consensus disorder prediction	235	258	-	-
	Gabi1631g00022	713	CDD	STK_N	1	87	-	-
	Gabi1631g00022	713	MobiDBLite	consensus disorder prediction	678	713	-	-
	Gabi1631g00022	713	SUPERFAMILY	Protein kinase-like (PK-like)	375	644	IPR011009	-
	Gabi1631g00022	713	Gene3D	Transferase(Phosphotransferase) domain 1	464	668	-	-
	Gabi1631g00022	713	ProSiteProfiles	Protein kinase domain profile.	391	669	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1631g00022	713	Coils	Coil	257	277	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1631g00022	Gabi-Chr1631	139027	146037	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1631g00022	1	686	Receptor kinase-like Gene Family	AT1G78940	58.357	0.0	779

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Gabi1631g00022		Pkinase	2.5e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1631g00022	-		-	gmx:100801601	1052.74