Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1631g00004 ATGCAATTAGCGTCAAATGATGATGACAAGGAACAATGCTCGGAAAGCGAACCCATCTTGAGTCGTCAGCAGCATCTTAATTTCCAACAACCATCTGGAGAGTCTTCATTCTCCTGTGAAATTATTCCTGCTGCCAACAATGATGATTTACAGAATGTTCATGTTGATGAGACTCGTCATCTTGTAAATACAGATCAGTCACAATGCCGGATATGCCTTGATATTGGAGGGGAAGATCTAATTGCCCCATGCCATTGCAGAGGTACACAAAAATTTGTCCACAGATCATGTCTAGATAATTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCGCCGGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCCAGGGATCACGCGTTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAATTGAGAGAAATGTTTGGTTACGAAGAACATCCATATGGATTTTATACAATGGCAGTTCTAGCCATTGTTTTGGTGGGATTGCTCTATGGCTTCTTCATAGCGATAATTTGTGGCCAAAAAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACAAAGGAATATGTGGTGGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTGGATCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG 771 0.4163 MQLASNDDDKEQCSESEPILSRQQHLNFQQPSGESSFSCEIIPAANNDDLQNVHVDETRHLVNTDQSQCRICLDIGGEDLIAPCHCRGTQKFVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQKINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1631g00004 256 SMART ringv_2 68 117 IPR011016 GO:0008270
Gabi1631g00004 256 Pfam RING-variant domain 69 116 IPR011016 GO:0008270
Gabi1631g00004 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 121 IPR013083 -
Gabi1631g00004 256 CDD RING_CH-C4HC3_MARCH 69 117 - -
Gabi1631g00004 256 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 189 256 - -
Gabi1631g00004 256 SUPERFAMILY RING/U-box 63 120 - -
Gabi1631g00004 256 ProSiteProfiles Zinc finger RING-CH-type profile. 61 123 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1631g00004 Gabi-Chr1631 9350 13856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1631g00004 1 215 C3H Transcription Factor Family AT1G50440 59.375 3.07e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1631g00004 - - gmx:100789593 472.241