Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1626g00001 ATGAGAAGACCCAAATCGAAGGACTTTCGGAAGCAACAACGAGTCTCAGAAGAGAACGAGATAAAATTGTTGGATTCATGGATCCAAAATCAGCTACCAGAGAGGGGTTCCAACCCCATATCGCTTCCTCCTCTCCCCAAAAATGCCCCTGTTGGGCGCTTCGACGACAACACCTTCTCGCGCTATGCGGGTGAGGCGAGGTTTGAGCAGTTGCCTCTCTCCAAGAAAACCAAGGATGGCTTGAGAGAAGTGAAGTTTGTCACCATGACTGATATTCAGAGGGCTTCTCTTCCCCATGCACTTTGTGTCCGTGATATCCTAGGTGCCTCCAAAACTGGATCTGGAAAAACCCTTGCTTTCATTATCCCGGTGTTGGAAAAATTGCGTAGAGAGAGATGGGGACTTGAAGATGGAGTTGGAAGCATCATCATATCGCCTACAAGAGAATTAGCTGGCCAGCTATTTGATGTATTGAAGTCCATTGGCAAGTACCATAATTTTAGTGCTGGCCTGCTCATTGGTGGTCGCAAGGATGTTGACATGGAGAAAGAACGTGTCAATGAGCTCAACATATTGATCTGCACACCTGATCGCCTTCTACAGCACATGGATGAAACTCCCAATTTTGATTGTTCACAGATGCAGGTTTTGGTACTAGATGAGGCTGATCGTATTCTTGACAGTGGATTCAAGAAGGAACTAAATGTATTCATCTCACAACCTATGTAG 729 0.4582 MRRPKSKDFRKQQRVSEENEIKLLDSWIQNQLPERGSNPISLPPLPKNAPVGRFDDNTFSRYAGEARFEQLPLSKKTKDGLREVKFVTMTDIQRASLPHALCVRDILGASKTGSGKTLAFIIPVLEKLRRERWGLEDGVGSIIISPTRELAGQLFDVLKSIGKYHNFSAGLLIGGRKDVDMEKERVNELNILICTPDRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNVFISQPM 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1626g00001 242 SMART ultradead3 85 241 IPR014001 -
Gabi1626g00001 242 Gene3D - 54 241 IPR027417 -
Gabi1626g00001 242 PANTHER RNA HELICASE 64 238 - -
Gabi1626g00001 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 239 IPR027417 -
Gabi1626g00001 242 Pfam DEAD/DEAH box helicase 90 240 IPR011545 GO:0003676|GO:0005524
Gabi1626g00001 242 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Gabi1626g00001 242 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Gabi1626g00001 242 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 242 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1626g00001 Gabi-Chr1626 15582 18442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1626g00001 48 234 Eukaryotic Initiation Factors Gene Family AT1G72730 25.789 4.04e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1626g00001 K14776 - gmx:100820055 418.313