Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1625g00027 ATGGCGATGGGGGTGGTGGCACTCGCGTGTGATGGCGATGGTGGCGGTGACGACAATGGTTGCAATGATGGTGGTGATGAGAGATGCGGGATTGGGAATAAGGAGCAGAATGAGTGGTATTTCTTTAGCCACAAAGATAAGAAATATCCAAGAGGAACGAGAACCAATAGAGCCACCACCATGGCAGGGTTCTCGAAGGCAACAGGAAGAGACAAGTCAGTGTATGAACGAACAAAACTCATTGGCATGAGGAAGACCCTCGTTTTCTATGCAGGAAGAGCTCCTAATGGACGAAAAACTGATTGGATCATTCACGAGTATAGGCTAGAATCTGACGATAATGGAACTCCACAGGCAAGCATATACATGGCAGGGTTTTTATATATCATTGGTCGAGATTTATCCAGAATATCAAGAGAAAAATTAGTTTAG 432 0.4491 MAMGVVALACDGDGGGDDNGCNDGGDERCGIGNKEQNEWYFFSHKDKKYPRGTRTNRATTMAGFSKATGRDKSVYERTKLIGMRKTLVFYAGRAPNGRKTDWIIHEYRLESDDNGTPQASIYMAGFLYIIGRDLSRISREKLV 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1625g00027 143 ProSiteProfiles NAC domain profile. 1 143 IPR003441 GO:0003677|GO:0006355
Gabi1625g00027 143 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 35 111 - -
Gabi1625g00027 143 Pfam No apical meristem (NAM) protein 33 109 IPR003441 GO:0003677|GO:0006355
Gabi1625g00027 143 SUPERFAMILY NAC domain 35 114 IPR036093 GO:0003677|GO:0006355
Gabi1625g00027 143 Gene3D NAC domain 21 125 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1625g00027 Gabi-Chr1625 168140 170471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1625g00027 27 118 NAC Transcription Factor Family AT2G18060 81.522 1.07e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1625g00027 NAM 1.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1625g00027 - - cpap:110822490 174.481