Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1625g00012 ATGTCTTTCTCTCTCAACAAAGCGTGTAAGAAGAGAAAAAGATGTCCCAAGATTTTCAGGTTTCACTCTTTCGCTGACCCTGGTTGCCCCATCACACCCTCTGGTCCATTCCGAGACAACGTTCGCTTCTTTCTTCAAGAAGCCGGAGAACTCGAAGATTACAAGGTCTTTGGCAACCCAATATGGCGCACCCTTCTCATCCATGACAAGACTAAGCCAATGGTTCCTCTCTACACCATCGAAGAGGACGTTAACCAGTCTTCCCATCCCTTCTGCGATCGTTGCCGCTCTCTAGGTTGGGGCGGCCATTTTGTTACAAAGAGAAGGTACCATTTCATCATCCCGATGGACAACTGGTGGCATAAATCCTTAAGTGAAGGTGCTCTTGACAGTCAGAATCATCATCTCTTGCATGGGGTTATTCACTGCAATGGATACGGGCATTTGCTTTGTATTAATGGCGTAGAAGGGGGTTCTAAGGTTCTCAGTGGGAGAGAGATCGTGGATCTCTGGGACAGGATCTGCATCAATCTTCGAGCAAGGAAAATTGGAGTGGAAGATGCTTCATATAAGAGGTCTATGGATCTTCGTTTACTTCATGGAGTTGCTTATGGGCACTCTTGGTTTGGTAGGTGGGGCTATAGATTTTGCCGTGGAAGCTTCGGTGTAACTGAGCAAAAATACTATGAAGCAATTGAGGCTCTTGCTACTTTGGAGCTTGAAAAGATTGTAAAAGATTTCAGCAAGACAAATTGCTTACTTCATAAAGAAATCAAACAAATGATTCGCTACTACAGAGATATGAGTGAAGCTCAGATTATCACAATCAGAGATCTTCTCAGGTTTATGCTTACTGTCAGGTCTCGTTCTCGTGCTCCTGTGTCCAAGATAACAGACATTTCTTCTGCTGCTGCTCCTCCCATGAAGGAAAAATCTGCTGCTAGGTATAAGAAGTTCAGCTGTGCAGTGACTTGTATGGATAGCAGGTGGCCAACACGGAGACTAGAGTTTGCAGCTCAAGTGATTGTGGATGCACTTAAAGAGAACAAGGCTGCCAAATCAGGTTCTTGTGGGATGACAAGACAAGAGGTGAGAGATGCAGCTCGGCTCCATATTGGTGATACAGGCTTACTGGATTATGTGCTGAAATCACTTAACAATGTGATTGTTGGAAATTTTGTTGTTCGTCGCAAGGTGAACCCGTCAACTCATATCCTGGAATATACTATTCATGAGCTTGGCAATGAGTTCAAAGCCCTGGAGCCTCCTGGGGTAATGGCTGTTGTAGAATCATCTTGGGTTCCTGGTAATGATGTCTACAACGATGTGTTTTATTTGTACAAAAATGTACTTTTAGGCTACCCTGATTCAGAACCAATGGACTTGGTAGCTCAGACAATTCTTGACAGCAGGCATTTCGTGAAGGAGTGGGCTTTAAGGGATGAAATGGGGCAGCATGTATTGAAATTCATTTGCCACTTGAAGGGAAATTTTATGGACACTAAGTCTGAGTTGGGCGAGATTGTTATGGTTCCACTGCATGCAACAGTCGGAGACTTGAAGCTAGCTGCTGAGGCTGCTCTGAGGGATACATACTGCATTGCAGAAGGACTTATAGTGACCGAAATTGCAGAATTGATGGATGTAGGTGATGAGGAAGTCCTTTTTGGACTAATCCAGTCTGGTATGGAACTTTCTGTAAGGGGTATTGCCATAGATTTGTGCACTCCATTGAAGTATCAGAGAGGGGCTGGCAATTGGAAGGTGAGGTGTGAATGTGGTGCTTGTGACGATGATGGGGAGAGAATGGTGGCTTGTGACATATGTGAAGTGTGGCAGCATACACGCTGCTGTGGCATCCATGACTCAGAGACAGTGCCACCACTGTTTATGTGCTCTAGCTGTTGTGATTCGCTCGTACCCCCAAGGATTGAATCCGGCTTCAGTGTGGATTGTGTTGATGATTTTCTGATTCCAACAGAGCCTACCCACTTACTGGAATATGAGTTAATACTTCAGCTTAAATGA 2028 0.4477 MSFSLNKACKKRKRCPKIFRFHSFADPGCPITPSGPFRDNVRFFLQEAGELEDYKVFGNPIWRTLLIHDKTKPMVPLYTIEEDVNQSSHPFCDRCRSLGWGGHFVTKRRYHFIIPMDNWWHKSLSEGALDSQNHHLLHGVIHCNGYGHLLCINGVEGGSKVLSGREIVDLWDRICINLRARKIGVEDASYKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEQKYYEAIEALATLELEKIVKDFSKTNCLLHKEIKQMIRYYRDMSEAQIITIRDLLRFMLTVRSRSRAPVSKITDISSAAAPPMKEKSAARYKKFSCAVTCMDSRWPTRRLEFAAQVIVDALKENKAAKSGSCGMTRQEVRDAARLHIGDTGLLDYVLKSLNNVIVGNFVVRRKVNPSTHILEYTIHELGNEFKALEPPGVMAVVESSWVPGNDVYNDVFYLYKNVLLGYPDSEPMDLVAQTILDSRHFVKEWALRDEMGQHVLKFICHLKGNFMDTKSELGEIVMVPLHATVGDLKLAAEAALRDTYCIAEGLIVTEIAELMDVGDEEVLFGLIQSGMELSVRGIAIDLCTPLKYQRGAGNWKVRCECGACDDDGERMVACDICEVWQHTRCCGIHDSETVPPLFMCSSCCDSLVPPRIESGFSVDCVDDFLIPTEPTHLLEYELILQLK 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1625g00012 675 CDD PHD_MMD1_like 591 635 - -
Gabi1625g00012 675 SMART PHD_3 592 636 IPR001965 -
Gabi1625g00012 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 578 639 IPR013083 -
Gabi1625g00012 675 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 643 - -
Gabi1625g00012 675 SUPERFAMILY FYVE/PHD zinc finger 585 641 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1625g00012 Gabi-Chr1625 101647 109515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1625g00012 10 641 PHD Transcription Factor Family AT5G22260 34.398 6.00e-123 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1625g00012 K26271 - gmx:100813850 967.992