Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1625g00004 ATGGGAAGAGCTCCTTGTTGTGATAAGGCAAATGTAAAGAGAGGACCATGGAGTCCTGAAGAAGATGCAAAGCTAAAGGAGTACATGGAGAAACATGGGACTGCAGGGAACTGGATTTCCCTCCCACAAAAAGCTGGTTTGAAAAGATGTGGGAAAAGCTGTAGACTCAGATGGCTTAATTATCTCAGACCCAACATCAAGCATGGAGAGTTTTCCATAGATGAAGATAGAATAATCTGCAGTCTCTTTGCTAGTATTGGAAGCAGATGGTCAATAATAGCATCTCAGTTACCAGGCAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAAAAAATGATGGGAATGAATCTTTCAGCACTGAAGAAACCTCACCAAGTTACCTTTTCATCCATCCTTCAAAATTCAACACCCTCTTCATCCTCTTCATCATCTTCACCAATATCATTCAGAGATAGCCACAACTCTTACTACCACCCCCATGTGTCTTTCACAGGCTCAGAGTCCATTTCATACTCTTCAAGTCTTTTGAGTGGTAATTTTTCTACCTCCGCTAATTCCATTTTTCAAGCACAAGAACTTGGATATGGTGGAGATGGAACTTTTGTTGATCACATAGGTGAGCTTAATTACCTCTACAGTGGGGTGGAAGATACTCAAAAGTTTATGCTATCCAATGCTGGTAGGGTTAGTGGGTGGACAGAGGAAAAAAGTAGATTATGGGGAGAAAATCCATTAGATTATGGTCTAGAAGAAATTAAACAGCTAGTAAGCAATAGTAGTTGCAACAACTTTTTGTTTGATGACAAGACAGAGGAAAGGGTCATGCACTATACTGATGCTGAATGTGGTCAAAATCAAGAATATTTGAAAGGGTAA 891 0.3996 MGRAPCCDKANVKRGPWSPEEDAKLKEYMEKHGTAGNWISLPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSIDEDRIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGMNLSALKKPHQVTFSSILQNSTPSSSSSSSSPISFRDSHNSYYHPHVSFTGSESISYSSSLLSGNFSTSANSIFQAQELGYGGDGTFVDHIGELNYLYSGVEDTQKFMLSNAGRVSGWTEEKSRLWGENPLDYGLEEIKQLVSNSSCNNFLFDDKTEERVMHYTDAECGQNQEYLKG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1625g00004 296 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gabi1625g00004 296 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gabi1625g00004 296 PANTHER OS09G0431300 PROTEIN 1 181 - -
Gabi1625g00004 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Gabi1625g00004 296 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gabi1625g00004 296 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gabi1625g00004 296 Gene3D - 69 135 - -
Gabi1625g00004 296 Gene3D - 7 68 - -
Gabi1625g00004 296 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi1625g00004 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Gabi1625g00004 296 CDD SANT 16 62 IPR001005 -
Gabi1625g00004 296 SMART sant 67 115 IPR001005 -
Gabi1625g00004 296 SMART sant 13 64 IPR001005 -
Gabi1625g00004 296 FunFam Transcription factor RAX3 7 68 - -
Gabi1625g00004 296 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1625g00004 Gabi-Chr1625 61228 63101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1625g00004 1 119 MYB Transcription Factor Family AT5G57620 84.874 7.06e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1625g00004 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1625g00004 K09422 - gmx:100794828 379.793