Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1625g00001 ATGGCGAGATCCTTCGACCTCAAAACGATGACGTATTCCTCACCGAGGCCACACATCCACCTTCCCACCGATCCAAACCTCTCCCTAACCTCGTTCCTCTTCCAAAGCACAGCCTCCTCCGCCGCATCCCTCGCTCTCGCCGACGCACATTCCGGCGAATCCCTCACCTTCCGTGACCTCAAAACGCAAGTCTCCGCCCTCTCTCGCATCTTGATACGACGCCTCGGAATCAAACTATGCGACGTCGTTTTGCTATTCGCTCCGAACTCTATACGCTTCCCTGTGTGCTTCCTCGCTGTCGTTGCCATTGGTGCCATCGCCACTACTTGCAACCCCTTATATACAGTCTCAGAACTCTCCAAACAAGTCCACGATTCCAAACCTAAGCTCGTCATCACCGTATCAGAACTCTTGGACAAAATCGAAGGATTAAACTTGAATTTACCGTTAATATTGCTCGATGGTGCTTCTACTCATGTAAATTCATCGAATGCGTTCGGTTCTAGGGTTTGGTACTACGCGGATTTGATCGGAGAGGCCGAGAAGGTTTCGGTTTCGGCTAACGGCGACGTTTTGCAGTCCGACGTGGCGGCGCTTCTCTACTCTTCCGGCACCACGGGGAGGAGCAAGGGAGTGGTGCTGACTCATCGGAACTTCATCGCGGCGTCGCTGGCGGTGACGGCTGATCAGGACCGGGACGGCGAGAGGAACAGCGTGTTCCTGTGCTTCCTGCCGATGTTCCACGTGTTCGGGCTCTCGATCATAACGTACTCGCAGCTGCGGAGGGGGAGCGCGGTGGTTTCGATGGGGAGGTTTGAACTGGAGAAGGCTCTGGCGGCGGTGGAGAAGTTCCGGGTGACGCATTTGTACGTTGCTCCGCCGGTGATGGTGGAGCTGGTGAAGCAGCGTGATGTGGTGAACAGGTATGACTTGTCGTCGCTGAAGCAGATTGCGGGTGGTGCTGCTCCTTTAGGGAGAGATTTGATGCAGGAGTGTGCTAAGATTCTACCCTGTGTTGAAATCATGCAGGGGTATGGCATGACTGAAGCATGTGGAATTATTTCCTTAGAAGATCCAAAGGAAGGTTGCCGCCTTTCAGGTTCAACGGGAACATTGAATCCATGTGTAGAATCCCGAATAGTTAATTTAGAAACATTGAAGCCCCTTCCACCGAATCAATTAGGGGAAATTTGGCTACGAGGACCTACTATGATGCAAGGTTACTTTAACAATCCAGAAGCGACAAAACTGACCATTGATGATCAAGGTTGGGTGCGTACAGGAGATCTTGGATATTTTGATGAAGAGGGACAGCTATATGTTGTAGATCGAATAAAAGAGCTTATCAAGTGTAGCGGGTATCAGGTGGCGCCAGCAGAACTTGAAGACTTGCTAGTTTCTCACCCTGAAATTTCTGATGCTGGGGTGATCCCATCCCCCGATGCTAAAGCTGGTGAGGTTCCAGTTGCTTATGTCGTTCGCTCACCCAATTGCTCCTTAACGGAAGAAGACATTCAGAAATATGTAGCAAAACAGGTTGCACCATACAAAAGGTTGCGGCGAGTGACTTTTATAGAAAAGATTCCCAAGTCAGCCACAGGAAAGATTTTAAGAAAAGATCTCATGAGTTTTGATCGACAAATGGCATCGAAGTTATAG 1659 0.5027 MARSFDLKTMTYSSPRPHIHLPTDPNLSLTSFLFQSTASSAASLALADAHSGESLTFRDLKTQVSALSRILIRRLGIKLCDVVLLFAPNSIRFPVCFLAVVAIGAIATTCNPLYTVSELSKQVHDSKPKLVITVSELLDKIEGLNLNLPLILLDGASTHVNSSNAFGSRVWYYADLIGEAEKVSVSANGDVLQSDVAALLYSSGTTGRSKGVVLTHRNFIAASLAVTADQDRDGERNSVFLCFLPMFHVFGLSIITYSQLRRGSAVVSMGRFELEKALAAVEKFRVTHLYVAPPVMVELVKQRDVVNRYDLSSLKQIAGGAAPLGRDLMQECAKILPCVEIMQGYGMTEACGIISLEDPKEGCRLSGSTGTLNPCVESRIVNLETLKPLPPNQLGEIWLRGPTMMQGYFNNPEATKLTIDDQGWVRTGDLGYFDEEGQLYVVDRIKELIKCSGYQVAPAELEDLLVSHPEISDAGVIPSPDAKAGEVPVAYVVRSPNCSLTEEDIQKYVAKQVAPYKRLRRVTFIEKIPKSATGKILRKDLMSFDRQMASKL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1625g00001 552 FunFam 4-coumarate--CoA ligase 2 447 547 - -
Gabi1625g00001 552 CDD 4CL 21 541 - -
Gabi1625g00001 552 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 446 - -
Gabi1625g00001 552 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Gabi1625g00001 552 Gene3D - 447 549 IPR045851 -
Gabi1625g00001 552 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Gabi1625g00001 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 541 - -
Gabi1625g00001 552 Pfam AMP-binding enzyme 43 451 IPR000873 -
Gabi1625g00001 552 SUPERFAMILY Acetyl-CoA synthetase-like 25 546 - -
Gabi1625g00001 552 Gene3D - 10 446 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1625g00001 Gabi-Chr1625 20819 30637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1625g00001 12 552 Monolignol Biosynthesis Gene Families AT4G05160 61.922 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1625g00001 K01904 - psat:127097095 777.319