Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1624g00013 ATGTCGGCTATGGTCTCAGCCCTTACGCAAGTCATTGGAGGCACTAACAATGACCAACTTCAGCCACATAATGATCAACAACCTTTAACTTCGTCACAGTCCAGCTCAACCCACAACGAACAATCCCAACAACCACGGCAAGATCAAGGGAGCGTAAGAAGAAGACACTATAGAGGAGTGAGGCAGCGGCCATGGGGAAAGTGGGCTGCGGAGATTAGGGATCCGAAGAAGGCACAAAGGGTATGGCTCGGAACTTTTGAAACTGCTGAAGCTGCTGCTCTTGCTTATGATGAAGCAGCTCTCAGATTCAAAGGAAGCAAAGCAAAGCTGAATTTTCCTGAAAGGGTTCAAGGTACAAGCGAGTTTGGTTACCTCACAAATCATCATCAAGAGTTTAATGCAGTGTCAAGCAGTAGTAATATTAATGAGCAAGCATCTAACCCAGTTGTTGCTCTTGCTTCCCGTCCACACTTTGCTCAAGAAACATATTCAAGTCCCTTTCATTACGCACAAATTTTGGGTAGTAGTGGAAGTAATAGCAACTTCAATCAAGATATGCTTCGTTTCTATGGTAGAGACATGTTTGTTTCTTCTCAGCCCTTAACGGCTGCATCTTCATCTTCTGGATTATCTCAGCAACAACAAGAGCTTCTGAGACTCCGGAATATGCAATTTGGAGGTTCTTCTTCTACTTCTGATCAGCCTCCTAGTAATTGGAGGGATGACATGGATGGTAAACATTAA 744 0.4409 MSAMVSALTQVIGGTNNDQLQPHNDQQPLTSSQSSSTHNEQSQQPRQDQGSVRRRHYRGVRQRPWGKWAAEIRDPKKAQRVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTSEFGYLTNHHQEFNAVSSSSNINEQASNPVVALASRPHFAQETYSSPFHYAQILGSSGSNSNFNQDMLRFYGRDMFVSSQPLTAASSSSGLSQQQQELLRLRNMQFGGSSSTSDQPPSNWRDDMDGKH 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1624g00013 247 MobiDBLite consensus disorder prediction 203 247 - -
Gabi1624g00013 247 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Gabi1624g00013 247 MobiDBLite consensus disorder prediction 13 61 - -
Gabi1624g00013 247 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Gabi1624g00013 247 Gene3D AP2/ERF domain 55 115 IPR036955 GO:0003700|GO:0006355
Gabi1624g00013 247 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Gabi1624g00013 247 MobiDBLite consensus disorder prediction 203 238 - -
Gabi1624g00013 247 PANTHER DNA-BINDING DOMAIN 31 196 IPR044808 GO:0003700|GO:0009873
Gabi1624g00013 247 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Gabi1624g00013 247 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Gabi1624g00013 247 MobiDBLite consensus disorder prediction 13 48 - -
Gabi1624g00013 247 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Gabi1624g00013 247 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Gabi1624g00013 247 Pfam AP2 domain 56 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1624g00013 Gabi-Chr1624 202198 203706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1624g00013 1 126 AP2-EREBP Transcription Factor Family AT5G61890 65.891 3.32e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1624g00013 AP2 2.4e-14 CL0081