LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1624g00004	ATGCCTTTTGAAATAATGGACCAGAGGGATGTTTCTGCCTCATCCCACTTTTTTGATGACATTTCCTATGCTTCTGAAAGGAATGTTGGATTACGGAAGCCGAAATCCATTCCTGACCATTATCCACAAGGAAAGAGTGAAATGGCGGAATCAGCCGGCAGCATTTTGAATGCTTCATTACCCCTCGAAACAAATCCAAAATCAGGCTTGCCAATGTCGCAGTTTAGTCCATCTAGAGAAATTGCAGAAAACCTACATTTTGGTGGAGAAACAGGCATTATAGATTTGCTGAAGGATTCGAAGAAATCATTGAATTACCATCCAAGATCATGGTCTGATGCTCATATGCAGCCAGCATCTAGCTCATATGGTTTAATTGGGAACAAGGTTGTCACCAATGCTGCCTCACGTGAAAGTAGTCTATTCTCAAGCTCTTTGTCTGAGATATTTAGCCAAAAATTGAGGTTATTGGGGAATAATGTTCTGTCTGATCAGCCTATCTTTGGTGGTTTACTTCCTGAGGAAGAACCGTATAAATCTCTTGAAGAAATTGAGGCTGACACTATTGGGAAGCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTCACTGATGAGTTAGGATACAGTGCTCATGCTAGAACGAGTGATGATTTTGAAGATTTTGATTTGTTTAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGATGAACATCTAGTTTCAGGAAAAAGAACCAGTTGCGTGGATGGAGATCTTGATTACTTTGGAGCTTCTAAAGGAAAAATTCCTTTTGATGAACAATCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGCACTCTTTGAGCAATATGGAGATATCCGAACCATTTATACTGCCTGCAGGCATCGTGGGTTTGTTATGATTTCTTATTATGACCTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAGAAGGATATTGGCCATGGTACGCTGATGATATCTGGTGTTGATTCATCTGTTTTGAATGATGAACTCAAACGGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAACATCCTGAAATGAATCATATCAAAAGTATTGAGTTTTATGATGCCCGAGCTGCAGAAGCTTCTCTCAAAGCATTGAATGGGATCTGCATTGCTGGGAAGCACATCACGCTTGAACCTGGCCATCCTAGGATTGCAACATGTATGATGCAGCAGTCTCAGAAGGGACATGATGAACCTGACTTCGGTCATAATCTCAGTGACAACTTATTATTAAGACAGAAGGCAGTGTCTTCTGGAGTCATTGCATCTGGTGGCAGCTTGGAAAATGGATATAATCAGGGATTTCAATCTGCAACACGGCCACCTTTGAATGCTTTCATTGATAACACATTCTTTCATGTGAATTCTAGCAGTCACAAGACCACAAGAGAGACACCTGCTGGTGTTTGTGAGTCAAATAACGTTGATGCAATGAAATTTGCATCTATTACGAGATTCCATCCTCATTCTTTACCTGAGTATCATGATAGTTTAGCTAATAGTCCTTACAACTTTTCAAGCACCATTAACATGGCTGCCAATGTTGGAACTGGAAGCTCAGAAGTGTCTAACAGCAGGCACAGTCAGGGAATGGGCTCAGCTGGGAACCTAGCAGAATTCAATGCAGGAGGAAATGGGAACCACCCCAATCATGGACTTTATCATATGTGGAATGGGTCCAACGTGCATCAGCAACCTCCATCAAATGCCATGCTTTGGCAGAAAACACCATCCTTTGTTAATGGTGCTTGTGCTCCATGTCTTCCACAAGTTCCTAGCTTTCCTAGAACACCGCCTCATATGCTGAGAGCATCACTTATTGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGACAACGTTCTTACTTGGGAGAATCTCCTGATGCTTCTGGTTTTAGATTGGGTTCTCTAGGAAGTGCAGGCTTTCATGGTAGCTGGCAGATGCATCCTCCAGATTTTTCTTCTCGCAACATATTTTCTCATGGTGGTGGGAATGGTACTGAGTTGACGTCCAATGCTGGGCTGGGCTCTCCTAAGCAGTTGTCTCATGTTTTCCCTGGGAGACTTCCCTTGACTTCAATGTCAAAATTTGATTCTACCAATGAACGAATGAGAAACCTCTATCATCGCAGAAGTGAAGCAAATACTAACAATGCTGATAAAAAACAGTATGAACTTGACCTCGGTCGCATATTGCGTGGGGAAGACAACCGAACAACGCTTATGATAAAAAATATTCCTAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGGACTTATGATTTTCTATATTTGCCAATTGATTTCAAGAACAAATGCAATGTTGGCTATGCATTCATCAATATGATTGATCCTGTTCAGATTATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAAAAGTTTAACAGTGAAAAGGTAGCCGTACTTGCATATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGTCCTATTCTCTTCCATACTGATGGACCAAATGCTGGTGATCCGGAGCCTTTTCCCTTGGGTACCAATATTAGACTGAGGCCTGGAAAATCTCGCATTATTGGTAATGAGGAGAATCGCAGCCAAGGAAATCCTTCAACTTTGGCAAGTGGAGATGAGTTTGCTAATGGAATAGATCCTTCATTGAGTTCTTCAAGAAACTCTGACTGA	2901	0.4133	MPFEIMDQRDVSASSHFFDDISYASERNVGLRKPKSIPDHYPQGKSEMAESAGSILNASLPLETNPKSGLPMSQFSPSREIAENLHFGGETGIIDLLKDSKKSLNYHPRSWSDAHMQPASSSYGLIGNKVVTNAASRESSLFSSSLSEIFSQKLRLLGNNVLSDQPIFGGLLPEEEPYKSLEEIEADTIGKLLPDEDDLFSGVTDELGYSAHARTSDDFEDFDLFSSGGGMELEGDEHLVSGKRTSCVDGDLDYFGASKGKIPFDEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACRHRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISGVDSSVLNDELKRIFGFYGEIKEIYEHPEMNHIKSIEFYDARAAEASLKALNGICIAGKHITLEPGHPRIATCMMQQSQKGHDEPDFGHNLSDNLLLRQKAVSSGVIASGGSLENGYNQGFQSATRPPLNAFIDNTFFHVNSSSHKTTRETPAGVCESNNVDAMKFASITRFHPHSLPEYHDSLANSPYNFSSTINMAANVGTGSSEVSNSRHSQGMGSAGNLAEFNAGGNGNHPNHGLYHMWNGSNVHQQPPSNAMLWQKTPSFVNGACAPCLPQVPSFPRTPPHMLRASLIDHHVGSAPVVTASPWERQRSYLGESPDASGFRLGSLGSAGFHGSWQMHPPDFSSRNIFSHGGGNGTELTSNAGLGSPKQLSHVFPGRLPLTSMSKFDSTNERMRNLYHRRSEANTNNADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPVQIIPFHQAFNGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGTNIRLRPGKSRIIGNEENRSQGNPSTLASGDEFANGIDPSLSSSRNSD	966

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1624g00004	966	CDD	RRM1_MEI2_like	269	344	IPR034453	-
	Gabi1624g00004	966	Pfam	RNA recognition motif 2	790	886	IPR007201	-
	Gabi1624g00004	966	SMART	rrm1_1	792	870	IPR000504	GO:0003723
	Gabi1624g00004	966	SMART	rrm1_1	271	339	IPR000504	GO:0003723
	Gabi1624g00004	966	SMART	rrm1_1	356	424	IPR000504	GO:0003723
	Gabi1624g00004	966	MobiDBLite	consensus disorder prediction	928	966	-	-
	Gabi1624g00004	966	Gene3D	-	353	448	IPR012677	-
	Gabi1624g00004	966	SUPERFAMILY	RNA-binding domain, RBD	267	426	IPR035979	GO:0003676
	Gabi1624g00004	966	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	357	421	IPR000504	GO:0003723
	Gabi1624g00004	966	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	272	336	IPR000504	GO:0003723
	Gabi1624g00004	966	CDD	RRM3_MEI2_like	793	878	IPR034454	-
	Gabi1624g00004	966	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	270	343	IPR000504	GO:0003723
	Gabi1624g00004	966	Gene3D	-	263	352	IPR012677	-
	Gabi1624g00004	966	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	355	428	IPR000504	GO:0003723
	Gabi1624g00004	966	FunFam	Protein MEI2-like 1	354	448	-	-
	Gabi1624g00004	966	SUPERFAMILY	RNA-binding domain, RBD	792	877	IPR035979	GO:0003676
	Gabi1624g00004	966	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	112	961	-	-
	Gabi1624g00004	966	MobiDBLite	consensus disorder prediction	932	966	-	-
	Gabi1624g00004	966	FunFam	MEI2-like protein 5 isoform 2	259	353	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1624g00004	Gabi-Chr1624	89425	97852	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1624g00004	267	423	Eukaryotic Initiation Factors Gene Family	AT3G16380	24.157	4.61e-08	55.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1624g00004	-		-	aprc:113865455	1560.04