Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1622g00008 ATGACCACTAATCAAGCCACTTCAGCGGATGAGGATCCAATAAGTTATATTGACTGCAGTGAAGATTGCATTCCAAATGACTTATCTAATGAAATGGAATATGGTGAAATCAAAGATTCCAGAAATGATGAAATAGAAGATGATATACCTAATGACTTGTCTGATAATAAGTTTAATGCCATTCTACCATCACCAACAAAGAGTACTACTGTTGTGATTGAGGTTGGAATGAAATTTTCCGAACAAAAGGATATATTAGACTTGTATACAACATTTGGGAAGGCAAACGGTTTTGGAATTCGGAAAAGAACATCCAACGAGAACTACGTGATGCTAACATGTGTTAGAGAGGGTTATCATCAACCGAGAAAGGGAAAAGATGTGTGTGAATTGTGTGCAACCAAACCAAGGTGGACATCATCATCACGTATGGGGTGTGAAGCTTGTCTCAAGGCTTCTAGAGAGAAAAAAACAAAAATGTGGAAAATCACATATTTCATTGACAAGCATAACCATGAGATGGTTACTCCAAAAAGTGTTTCATATTTGAGATCACATAGAAAAATGCCCGATGCTGCAAAATGTTTGATAGAAGAATTCAATAACGCGGGTTTGCCTACTGGAAAGGTGGCCACTATCTTCAAAAGCCATGATTTAGGGTTTGACAGTCGAGATTGTTATAATCATATGAAAAATGTGAGGAGAAGGTCCCTCTTATTAGGATGTGCTTTATTACACGATGAGACTGAGGATAGTTTTGTATGGCTTTTTGAGGAATGGCTTCGAGCAATGAATGGAAAACATCCAGTTGCCATAATTACTGATCAAGACTTGGCGATTAGCAATGCAGTCTCCAAAGTTTTTCCAAATACGAAACACAGATTTTGTTTGTGGCATATCATGAAAAAGTTTCCAGAAAAGTTATCTCATCTCTACCATGACCACGCATCATTTAAAAGGCATTTGAATGACTGTATTTGGAGCTTCAAGAGCACTCAAGAGTTTGAAGATAGATGGCAAAGATTTCTTATTCAGTATGGTCTTATTGAAAATGAGTGGTTGAATGTACTTTATATAATTAGATCCTCTTGGGTACCAATCTTTAACCATTCCACTTTCTTTGCTGGTATGAACACTACTCCACGTAGCGAAAGTATAAATTCATTTTTTGATGGTTTTGTTACATCTGGCACAACTTTAAAGGAATTTGTGGAGAAATATAACCAAGCAATAGATGCTCGCTACGAGTCATTTAAAAAAGAAGACTTTGAATCTAGGCACAAAGAAAGGATTTTGACATTTAATATGCCATTGGAGGAGCATGCTGCTAAAGTGTATACCCGTGCAATTTTTTCAAAGTTTTGCGATCAACTTTCTCTTAGTTTACGATTTTCTAAGGAGAAACTTGGGGATGATTGTGAGTGGGTTATTTACCGAGTTTTTAACAGGAAAGATGTAGAAGATTATGCAACAGTTGAGATGAAATTGGAAAACAGAGAAGCTAGGTGTTCTTGCCATTATTTTCAGTTCATGGGAATCTTATGTCGGCACATGCTTGCTATTTTTCTTATTGAAAATGTTGAACAGATTCCTGAACACTTCATTCTGCAGCGTTGGAGCAAGGAAGGAAATGTGATACCAAGCGGAGAGAAGGACAAATGTACTGCAAATGGAGATAGACTTCTTCGCAGCTTTCATCTACGCTCTAGATATTCCAAACTTGATGACCTTGCATATAAGTCAGATGAAGCATTTAAATTAATTTGTGATGGTATTGATTCTCTCTATAAAGCTGCAGAAAAAGTTCTAGCGTGCGAAGAGAGTAGTGGTCTTGGGGATTCTAATTTACAGTTGTTGAGTTTTCATCATGAAGAGCCTTCTATGATGTACTTGAAGGATCCAAATATTTCACAAACGAAAGGGCGGAAAAGGGACTCAGAAAGTACTTCACAGGGACACAGGATTCGTAGCGGGATTGAAGAAGCATCAAAGCATACTAATATTTGTGGCAATTGGGTTATTTTTGGCAATTGTAGTAGCACTTATAGTAAAAGTGGTGTGTTTTCTTCTAGTCATATTACACACCAATTGGGAGAAAGAAGTAACATGTTCACCAATTGGCAAGCCACAAGTGATGTGTTAAGCTAA 2148 0.371 MTTNQATSADEDPISYIDCSEDCIPNDLSNEMEYGEIKDSRNDEIEDDIPNDLSDNKFNAILPSPTKSTTVVIEVGMKFSEQKDILDLYTTFGKANGFGIRKRTSNENYVMLTCVREGYHQPRKGKDVCELCATKPRWTSSSRMGCEACLKASREKKTKMWKITYFIDKHNHEMVTPKSVSYLRSHRKMPDAAKCLIEEFNNAGLPTGKVATIFKSHDLGFDSRDCYNHMKNVRRRSLLLGCALLHDETEDSFVWLFEEWLRAMNGKHPVAIITDQDLAISNAVSKVFPNTKHRFCLWHIMKKFPEKLSHLYHDHASFKRHLNDCIWSFKSTQEFEDRWQRFLIQYGLIENEWLNVLYIIRSSWVPIFNHSTFFAGMNTTPRSESINSFFDGFVTSGTTLKEFVEKYNQAIDARYESFKKEDFESRHKERILTFNMPLEEHAAKVYTRAIFSKFCDQLSLSLRFSKEKLGDDCEWVIYRVFNRKDVEDYATVEMKLENREARCSCHYFQFMGILCRHMLAIFLIENVEQIPEHFILQRWSKEGNVIPSGEKDKCTANGDRLLRSFHLRSRYSKLDDLAYKSDEAFKLICDGIDSLYKAAEKVLACEESSGLGDSNLQLLSFHHEEPSMMYLKDPNISQTKGRKRDSESTSQGHRIRSGIEEASKHTNICGNWVIFGNCSSTYSKSGVFSSSHITHQLGERSNMFTNWQATSDVLS 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1622g00008 715 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 69 592 IPR031052 GO:0006355
Gabi1622g00008 715 Pfam FAR1 DNA-binding domain 88 175 IPR004330 -
Gabi1622g00008 715 Pfam SWIM zinc finger 498 523 IPR007527 GO:0008270
Gabi1622g00008 715 Pfam MULE transposase domain 232 303 IPR018289 -
Gabi1622g00008 715 ProSiteProfiles Zinc finger SWIM-type profile. 490 526 IPR007527 GO:0008270
Gabi1622g00008 715 MobiDBLite consensus disorder prediction 634 657 - -
Gabi1622g00008 715 SMART 26again6 501 528 IPR006564 GO:0008270
Gabi1622g00008 715 MobiDBLite consensus disorder prediction 637 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1622g00008 Gabi-Chr1622 111975 115543 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi1622g00008 FAR1 1e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1622g00008 - - mtr:112420966 501.13