Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1622g00004 ATGTCTTTGGTGGCTAACGAGGAATTCCAGCACATCTTGCGTGTGCTAAACACCAACGTTGATGGGAAGCAAAACATCATGTTCGCTCTTACCTCAATCAAGGGTATTGGTAGGCGATTCGCTAACATCGTGTGCAAAAAAGCCGATGTCGACATGAACAAGAGAGCTGGTGAATTGAGTGCTGCTGAGTTGGATAATCTTATGACTGTGGTTGCCAACCCTAGGCAATTCAAGATCCCAGATTGGTTTTTGAATAGGAAGAAGGACTACAAGGATGGGAAGTATTCTCAGGTGGTGTCAAATGCACTGGATATGAAGTTGAGGGATGATTTGGAGCGATTGAAGAAAATCAGAAACCACCGTGGTTTGAGGCACTACTGGGGTCTTCGTGTTCGTGGCCAGCATACTAAAACTACTGGTCGCAGGGGGAAAACTGTTGGTGTCTCTAAGAAGCGTTAA 459 0.4553 MSLVANEEFQHILRVLNTNVDGKQNIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1622g00004 152 FunFam 40S ribosomal protein S18 1 80 - -
Gabi1622g00004 152 Hamap 30S ribosomal protein S13 [rpsM]. 12 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gabi1622g00004 152 Gene3D - 1 80 - -
Gabi1622g00004 152 ProSiteProfiles Ribosomal protein S13 family profile. 15 145 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gabi1622g00004 152 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 2 152 - -
Gabi1622g00004 152 FunFam 40S ribosomal protein S18 92 143 - -
Gabi1622g00004 152 ProSitePatterns Ribosomal protein S13 signature. 121 134 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gabi1622g00004 152 Pfam Ribosomal protein S13/S18 14 142 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gabi1622g00004 152 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 5 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gabi1622g00004 152 Gene3D 30s ribosomal protein s13, domain 2 92 142 IPR027437 -
Gabi1622g00004 152 SUPERFAMILY S13-like H2TH domain 13 152 IPR010979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1622g00004 Gabi-Chr1622 65297 67582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1622g00004 1 152 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 96.711 1.86e-109 306