Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi161g00013 ATGGCTGCTGCTATTGTGGGAGAAGCACTACTCTCTGCTTCTGTAGAGTTGTTGTTAGACAAGATCATTTCAGGTGAGTTCGTGGACTTCTTTCGGAGCAAGAAGCTTGACGTTTCACTCCTCAAAAAGATGAAAATAACACTGCTGAGTCTTCAAGCTGTACTGAACGATGCTGAAGAGAAACAAATTACCAATTCTGCTGTCAGGGAATGGCTGGATGTGCTCACAGATGCTGTCTTCGATACTGATGATTTATTGGACGAAATCAACACTAAGGCTTTGCGAAGCAAAATGAAAGCCGAGTCTCAAGGTCAAACCTTCAGCGCTAAGGTGCCCAGCTTCCTTTCTTCTCCTTTTAAACGGTCTTATAAGGTGATCAATTCAAAAATGCAAACATTGTTTGAAAGATTAGAACAATTTGCACAGAAGGGACACCTTCTTGGATTGAAAGAAGGTGTTTCTGGTAGTGTTTGGCATGGAACTCCTACAGGTTCTGTGGTAAATGAATTTGCTATATATGGCAGAGATGATGATAGAAGAAAACTTAAAGATTATTTGCTGTCAGAAGATGTTAATGGTTGTAAAATAGGAGTGGTTTCCATTGTGGGCATGGGAGGGCTCGGTAAAACAACTCTTGCTAAACTCCTATTTAATGATTCTGATTTAAAACAGAAATTTGATGTTAAAGCATGGGCATATATTTCCAAGGAGTTTGATGTTTGTAGGGTTACCAAAACCATTCTTGATTCTGTCACTTCAGAAACAATTAGTCCCGATAAGCTGAACTTGAACACTCTGCAAATAAAATTGCAGCAAAGCTTGAGCCATAAAAGATTTTTGCTTGTATTGGATGACATATGGGATGGAAGCTATGTTGAATGGAACGATCTAATGGACATCTTTAATGCTGGAGAAATAGGAAGTAGGATCATCGTCACAACACGAGATGAAAGTGTTGCAAAGGCCATGCAAACCTTTCTTCCTATCCACTATTTGAGACCCATAGAAAGTGAAGATTGCTGGTCTTTACTTGCCAAACATGCATTTAGAGCAAGTTGCCACGGGGAACGGTCCAACCTAGAAGTAATTGGTAGAGAAATTGCAAACAAATGTGATGGCTTACCATTAGCCGCAATAGCACTTGGGGGTCTTCTTCGCACCAAGTCATCGGAAGATGACTGGAAGAAGGTATTAAAAAGTAACATTTGGGATTTGCCAAATGTTAATGTGCATCGAGCTCTGCTATTGAGCTATCAATATCTTCCAGCTCCATTAAAACAGTGCTTTGCATACTGTTCAATTTTTCCAAAGAACTCCAAGTTAGTCAAAAAGACCGTAGTTCAGCTGTGGATTGCAGAAGGCTTAGTGTATCAGTCCAAGAGTGAGAAAAGCATGGAAGAAGTAGGTGATGAATACTTTGATGAACTAGTGTCAAGGTCCCTGATACATCGACAGTCTGTTGATGGAGAATCAAGCTATGACATGCACGACCTCATCAATGATTTAGCTACAATGGTTTCTTCTTCATATTGTATCAGGTTGGATGAAAGGAAGCTGCATGGGAATCTTGAAAGAGTACGTCATTTGTCATACAATAAAGAGTATTATGACTCTTTTAGTAAGTTTGATACTTTGTATGGATTGAAAGGTCTGCATACCTTCCTAGCTTTACCATTACAATTACAAGAAAAAAATTCCTGGCCAATCAATTATCTATCGAACAAGGTAATACATGACTTATTGCCAGCTATGAAACAATTAAGGGCTTTGTCTTTGTTTAACTACGAAAGTATCACTGAGTTGCCCGACTCTATTGGAAATTTGATATACCTGCGATACTTAAATCTCTCTCGCACTCATATTAAAAGGTTGCCTTCTGTAATATGCAAGATTTACAATCTACAGACCTTGTTGTTGTGTGATTGTAGGGATCTCATTGAATTGCCCGAGGACATGGGAAAATTGGTCAATCTACGCCACCTTGACATTAGTGGCACTAAATTGCAGGAGATGCCAATACAAATTGCCAAACTAGAAAATCTCCAAACCTTGTCTGCTTTTTTTGTGAGCGGACAGCAAGATGGATTGAAGGTTGCAGAGCTTAGTAAATTTCCCCGTCTACAGGGCAAGCTTTCCATCTCTGGACTACAATATGTTACTCATCCCTCGGATGCTTCTCAAGCAAATTTGAAGATGAAGGAACAGATTGACGAGATGAGACTAAAATGGGGTTGGTATGAACGCAATACAGAAGCCACCCGACAAATTGAAAGTCTTGTACTTGAACAGTTGCAGCCCTCAACAAATTTGAAAAAACTGACTGTCGATGGCTATGGTGGAAGCAGCTTTCCAAATTGGTTAGGTGATTCTTCATTTGGCAAAATGGTGTATTTGTGCATAATTAATTGCCACCATTGTTCGTCACTCCCACCACTTGGACAGTTAGTTAGTCTCAAAAAACTCATGATTAATGGGATGAAATCAGTAAAGAGTGTGGGTGCTGAATTTTATGGAAGTAGTTCGGCTTCATTTAAACCATTTCCCTCATTGGAGACTTTGTCATTTAGGGACATGGATGATTGGGAGGAATGGAAATTGATCGGAGGAGAAGCTACAAAGTTTCCTAGACTAAGACGTCTGTCCCTTTCATATTGTCCCAAACTGAAAGGAAATATACCCAACAACCTTCCTTCCTTAACTAAACTTGAGTTAAGGGGTTGTCCTCTGCTGGAGTCAGGAAATTCAGATGATAATAATAGGAACATTGTGAGGTCATCAAATCTATTCAGCCAAATGATTTCTTTCAATTCTCTTCAAAAGTTAACCATAGATGGCTTTCCCTCTCTGAAGTCCTTCCCAATAGACGGTCTACCCAAAACCTTACAATCACTTGATGTCGATTCTTGTGTGAATCTGGAATTCCTTCCTCAAGAATCATTGCAAAATTACACATCACTTGAGGATTTGAAAATAAGTTATAGCTGTGATTCAATGACATTCTTTACCTTGGGCTCTCTCCCTGTGCTCAAAAGTCTTGACCTTTATAGTTGTAAAAATCTTAAATCGATTTTAGTTGTAGAGGATGATGTTTTGCAGAGTCTCTCCTTTCTTCGAAGTATCAGTATTCGGAGTTGTAATGAACTGGAGTCATTTTCCCCAGGTGGATTGCCTGCTCCTAACCTTATTAGTTTGGAGGTGTATAACTGTGAGAAGCTTAATTTACTAGCAGAGCCAATTAACACTCTCACTGGTCTTCAAGAATTGAGAGTTTATAACCTTCCAAATCTGCAATCTTTTGCCAAAGAGGGTTTGCCTACCAATCTACGGTATCTCAGTGTCGCCCGACTTGGAGGGATTTTGTCGAATCCTAGAGTTATTACTGAGTGGAGTTTGGAACGGCTCACTTGTCTTTCCCTGTTGCGGATTCAAGGTGATGATCTCGTGAACACGCTGATGAAAATGGATGTGCAAGTCCTACCAGCTTCTCTTGGGCGCCTATTCATCTCTGATCTTGATAATATAAAATGCTTGCATGGGAAGTGGCTTCAGCATCTCACCTCTCTCCAAGAACTTAACATTTCAAGATGTCCCAACCTCAAGTCGTTGCCAGAAGAGGTATTGCGTTCCTCTCTTTCCAGACTGGAAATCGACGGGTGCCCATTACTGAAAGCAAGTTGGCAGAAGAAGCGAGGGAAAGAGTGGCATAAGATTGCTCACATTCCCTTCATAATGATCGACTATGAAATATATTCTTCGTGA 3759 0.4009 MAAAIVGEALLSASVELLLDKIISGEFVDFFRSKKLDVSLLKKMKITLLSLQAVLNDAEEKQITNSAVREWLDVLTDAVFDTDDLLDEINTKALRSKMKAESQGQTFSAKVPSFLSSPFKRSYKVINSKMQTLFERLEQFAQKGHLLGLKEGVSGSVWHGTPTGSVVNEFAIYGRDDDRRKLKDYLLSEDVNGCKIGVVSIVGMGGLGKTTLAKLLFNDSDLKQKFDVKAWAYISKEFDVCRVTKTILDSVTSETISPDKLNLNTLQIKLQQSLSHKRFLLVLDDIWDGSYVEWNDLMDIFNAGEIGSRIIVTTRDESVAKAMQTFLPIHYLRPIESEDCWSLLAKHAFRASCHGERSNLEVIGREIANKCDGLPLAAIALGGLLRTKSSEDDWKKVLKSNIWDLPNVNVHRALLLSYQYLPAPLKQCFAYCSIFPKNSKLVKKTVVQLWIAEGLVYQSKSEKSMEEVGDEYFDELVSRSLIHRQSVDGESSYDMHDLINDLATMVSSSYCIRLDERKLHGNLERVRHLSYNKEYYDSFSKFDTLYGLKGLHTFLALPLQLQEKNSWPINYLSNKVIHDLLPAMKQLRALSLFNYESITELPDSIGNLIYLRYLNLSRTHIKRLPSVICKIYNLQTLLLCDCRDLIELPEDMGKLVNLRHLDISGTKLQEMPIQIAKLENLQTLSAFFVSGQQDGLKVAELSKFPRLQGKLSISGLQYVTHPSDASQANLKMKEQIDEMRLKWGWYERNTEATRQIESLVLEQLQPSTNLKKLTVDGYGGSSFPNWLGDSSFGKMVYLCIINCHHCSSLPPLGQLVSLKKLMINGMKSVKSVGAEFYGSSSASFKPFPSLETLSFRDMDDWEEWKLIGGEATKFPRLRRLSLSYCPKLKGNIPNNLPSLTKLELRGCPLLESGNSDDNNRNIVRSSNLFSQMISFNSLQKLTIDGFPSLKSFPIDGLPKTLQSLDVDSCVNLEFLPQESLQNYTSLEDLKISYSCDSMTFFTLGSLPVLKSLDLYSCKNLKSILVVEDDVLQSLSFLRSISIRSCNELESFSPGGLPAPNLISLEVYNCEKLNLLAEPINTLTGLQELRVYNLPNLQSFAKEGLPTNLRYLSVARLGGILSNPRVITEWSLERLTCLSLLRIQGDDLVNTLMKMDVQVLPASLGRLFISDLDNIKCLHGKWLQHLTSLQELNISRCPNLKSLPEEVLRSSLSRLEIDGCPLLKASWQKKRGKEWHKIAHIPFIMIDYEIYSS 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi161g00013 1252 Gene3D Ribonuclease Inhibitor 559 956 IPR032675 -
Gabi161g00013 1252 Gene3D Ribonuclease Inhibitor 1108 1237 IPR032675 -
Gabi161g00013 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 432 IPR027417 -
Gabi161g00013 1252 Coils Coil 41 61 - -
Gabi161g00013 1252 FunFam Probable disease resistance protein At1g61300 163 326 - -
Gabi161g00013 1252 Gene3D Ribonuclease Inhibitor 957 1107 IPR032675 -
Gabi161g00013 1252 Pfam NB-ARC domain 181 399 IPR002182 GO:0043531
Gabi161g00013 1252 FunFam Probable disease resistance protein At1g63360 418 505 - -
Gabi161g00013 1252 SUPERFAMILY L domain-like 930 1238 - -
Gabi161g00013 1252 PANTHER DISEASE RESISTANCE PROTEIN RP 41 905 IPR044974 GO:0006952
Gabi161g00013 1252 Gene3D - 335 416 IPR042197 -
Gabi161g00013 1252 Gene3D - 417 505 IPR036388 -
Gabi161g00013 1252 Pfam Rx N-terminal domain 11 103 IPR041118 -
Gabi161g00013 1252 Gene3D - 21 138 - -
Gabi161g00013 1252 PRINTS Disease resistance protein signature 371 385 - -
Gabi161g00013 1252 PRINTS Disease resistance protein signature 1004 1020 - -
Gabi161g00013 1252 PRINTS Disease resistance protein signature 273 287 - -
Gabi161g00013 1252 PRINTS Disease resistance protein signature 198 213 - -
Gabi161g00013 1252 SMART LRR_typ_2 655 678 IPR003591 -
Gabi161g00013 1252 SMART LRR_typ_2 1185 1209 IPR003591 -
Gabi161g00013 1252 SMART LRR_typ_2 608 631 IPR003591 -
Gabi161g00013 1252 Gene3D - 159 327 IPR027417 -
Gabi161g00013 1252 SUPERFAMILY L domain-like 491 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi161g00013 Gabi-Chr161 139614 146325 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi161g00013 196 832 WRKY Transcription Factor Family AT5G45050 22.537 7.18e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi161g00013 - - tpra:123916222 1540.4