Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1616g00029 ATGCATCCTTCTGCCTTGAATAATTTTGAGGAAGTGATGAGCATTGCCAAAGGGAAAGAGATTGTTGTGTTTTTGGACTATGATGGAACACTTTCACAGATTGTAGATAACCCTGATCAGGCTTACATGAGCGATGCTATGCGTGCAGCTGTAAGAGAAGTTGCATCTTGCTTTCCCACTGCCATTGTTAGTGGAAGAAGCAGGGATAAGGTTTACGAATTTGTTAAGTTAAGGAATGTATATTATGCTGGTAGTCATGGTTTGGATATCTCAACCCCATTTGGCTCAACAAAACATGAAGATAAGAAGTATCAGACAAAGGGTGGTAATCAAGTAGTTCACTTTCATCCGGCAAAAGAATTTTTGCCAACAATCCAAGAGATAAGGAAGATTTTGAAAGAAAAAACTACATTAATAAAAGGCTCTATGATAGAGGATAATATGTTCTGCATCAGTGTACACTACAGGCGTGTGAAAAATGAAGAGGATATTGTTGTTCTCAGAGAAATTGTGGAGTCTATTATGAAATCTTACCCTAACTTTCACATATCAGGAGGAAGAAAGGTTATGGAGATACGCCCAAATGTGAACTGGGATAAAGGTCATGCTCTGATGTATTTGCTTGACACTCTTGGCTTTGACAACTCTAATGATGTTCTTCCTATGTACATTGGTGATGACAGAACTGATGAAGATGCTTTTAAGGTTATAAGACACATTGGAAGAGGTTTTCCTATCGTTGTTTCTTCAATTGCTAAGGAGACAAAGGCTTCATATTCTCTGCGTGACCCTGCTGATGTGATGACTTTTTTGAAACGTTTAGCAAAATGGAAGAAAAACCTTTTGTTACCCAAAACTAAACAAACCTGA 870 0.3793 MHPSALNNFEEVMSIAKGKEIVVFLDYDGTLSQIVDNPDQAYMSDAMRAAVREVASCFPTAIVSGRSRDKVYEFVKLRNVYYAGSHGLDISTPFGSTKHEDKKYQTKGGNQVVHFHPAKEFLPTIQEIRKILKEKTTLIKGSMIEDNMFCISVHYRRVKNEEDIVVLREIVESIMKSYPNFHISGGRKVMEIRPNVNWDKGHALMYLLDTLGFDNSNDVLPMYIGDDRTDEDAFKVIRHIGRGFPIVVSSIAKETKASYSLRDPADVMTFLKRLAKWKKNLLLPKTKQT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1616g00029 289 Gene3D - 21 116 IPR023214 -
Gabi1616g00029 289 Gene3D - 117 283 IPR023214 -
Gabi1616g00029 289 CDD HAD_TPP 22 268 - -
Gabi1616g00029 289 NCBIfam HAD-IIB family hydrolase 23 241 IPR006379 -
Gabi1616g00029 289 NCBIfam trehalose-phosphatase 19 276 IPR003337 GO:0003824|GO:0005992
Gabi1616g00029 289 FunFam Trehalose 6-phosphate phosphatase 118 195 - -
Gabi1616g00029 289 FunFam Trehalose 6-phosphate phosphatase 124 283 - -
Gabi1616g00029 289 Pfam Trehalose-phosphatase 24 264 IPR003337 GO:0003824|GO:0005992
Gabi1616g00029 289 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 280 IPR044651 GO:0004805|GO:0005992
Gabi1616g00029 289 SUPERFAMILY HAD-like 22 280 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1616g00029 Gabi-Chr1616 244745 246685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1616g00029 17 275 Trehalose Biosynthesis Gene Families AT1G70290 24.542 1.61e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1616g00029 K01087 - gmx:100799466 448.743