Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1616g00027 ATGGCAGGTTTGAAAATGATCCTATTACTGATGGATTTCACAAAAGAAAAGTTAAGCCAAGTAAAATGCCTTGATTTGGATGAAACATTGAAGATTACTGCTAGTGTTCTTCGCACATTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAATTTCGAACCGGGTTTATTGCCCCTTCTTCTCGTGTATTTGGAAGGGGTGAGCTTGTTGATGATCCTTGTACCATAGTGATGAGATACTTAAGTTCTTACTTCATCATTGACATTCTATCAATTATTCCAATTCCTCAGATGGTCATTTTATCTATCATTCCAATACCAGAAGGCTCAGTTCCACTTGCGGCAAAGGATTTGTTGAAGTATGTAATAATAATTCAGTATGTGCCAAGACTTCTACGGATCTATCCTATGTTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTATTTTCCGTAGAATCAGAGGTGCGGTGCTGGCGCAGACAGTTGAAGAATACTACATTCTCTCATGATTCCTACATGAGCTGTGGATATGGCATTCCTAGTGTTCTATCACTTCTCAATAATTCTTGCCCTTACACTGATCCTGATGAAACAGAAGACCTCACAGTTTTCAATTTTGGAATATTTTTACAAGCTCTAAAGTCTCGTGTGGTAGAATCAACTACAAATTTCCCTCATAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCTGTTGGGCAAAACCTACAGACAAGTACTTATGTTGGGGAGATAATCTTTGCTATCTTCATTGCTGTCTTTGGATTGGTTCTGTTCGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACAGTGGATGTCCCACCGTATGCTACCTGACTACTTGAAGGAAAGAATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAAGAGACATTAATTCGAAACCTCCCTAAAGATCTCAGAAGGGACATAAAGAGTCACCTTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATAAACAGTTGTTGGATGCAATGTGTGATAGACTTAAGCCAGTACTTTACACAGAGAAAAGTGACATTGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATCATGCGTGGAAAACTTGCCACTACCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGAGCTCAAGGCTGGTGACTTTTGTGGAGAAGAGCTCTTAACATGGGCATTGGATCCCAACTCCACCTCAAATCTACCTATTTCAACCAGAACAGTAAAAACTATATCAGAAGTGGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGCTTGTTGCTTCCCAATTTCGACGTCTTATAAACAGCAAACAGCTCAAGCACACTTTCAAGTTCTATTCCCTGCAATGGAGGACATGGGCTGCATGTTTCATACAAGCAGCTTGGCGTAGAAACAGGAAAAAAAAGAATGAGAGGTCATTACGTGAAGCAGAAGAGAGGCTACATGCTTATGAAAATGAGGAAGGGTCCTCACCAAGCTTTGTTGCCACAGTATATGCATCAAGGTTTGCATCCAATGCATTAAAGCCCTTGCGAAGTGGCAAACGCAACAGATTGCCACAGACACAGAGATTAATGCCATTCCTGCCTCAGAAGCCAGCTGAACCAGATTTCACTACTCAAATGACTTGA 1854 0.4029 MAGLKMILLLMDFTKEKLSQVKCLDLDETLKITASVLRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELVDDPCTIVMRYLSSYFIIDILSIIPIPQMVILSIIPIPEGSVPLAAKDLLKYVIIIQYVPRLLRIYPMFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESEVRCWRRQLKNTTFSHDSYMSCGYGIPSVLSLLNNSCPYTDPDETEDLTVFNFGIFLQALKSRVVESTTNFPHKFFYCFWWGLRNVSSVGQNLQTSTYVGEIIFAIFIAVFGLVLFALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMSHRMLPDYLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKSHLCLDLLKKVPMFENMDKQLLDAMCDRLKPVLYTEKSDIVREGDPVDEMLFIMRGKLATTTTNGGRTGFFNSSELKAGDFCGEELLTWALDPNSTSNLPISTRTVKTISEVEAFALMPDDLKLVASQFRRLINSKQLKHTFKFYSLQWRTWAACFIQAAWRRNRKKKNERSLREAEERLHAYENEEGSSPSFVATVYASRFASNALKPLRSGKRNRLPQTQRLMPFLPQKPAEPDFTTQMT 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1616g00027 617 Gene3D Jelly Rolls 386 506 IPR014710 -
Gabi1616g00027 617 FunFam Cyclic nucleotide-gated ion channel 1 315 379 - -
Gabi1616g00027 617 SUPERFAMILY Voltage-gated potassium channels 26 310 - -
Gabi1616g00027 617 ProSiteProfiles cAMP/cGMP binding motif profile. 388 472 IPR000595 -
Gabi1616g00027 617 MobiDBLite consensus disorder prediction 585 617 - -
Gabi1616g00027 617 Coils Coil 541 561 - -
Gabi1616g00027 617 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 21 612 - -
Gabi1616g00027 617 Pfam Ion transport protein 6 316 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi1616g00027 617 Gene3D Helix hairpin bin 315 379 - -
Gabi1616g00027 617 CDD CAP_ED 388 508 IPR000595 -
Gabi1616g00027 617 SMART cnmp_10 388 519 IPR000595 -
Gabi1616g00027 617 SUPERFAMILY cAMP-binding domain-like 317 504 IPR018490 -
Gabi1616g00027 617 Gene3D - 4 312 - -
Gabi1616g00027 617 FunFam Cyclic nucleotide-gated ion channel 1 386 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1616g00027 Gabi-Chr1616 172547 176572 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1616g00027 22 614 Ion Channels AT5G53130 67.672 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1616g00027 K05391 - gmx:100795201 986.097