Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1616g00026 ATGATCCTATTACTGATGGATTTCACAAAAGAAAAGTTAAGCCAAGTAAAATGCCTTGATTTGGATGAAACATTGAAGATTACTGCTAGTGTTCTTCGCACATTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAATTTCGAACCGGGTTTATTGCCCCTTCTTCTCGTGTATTTGGAAGGGGTGAGCTTGTTGATGATCCTTGTACCATAGTGATGAGATACTTAAGTTCTTACTTCATCATTGACATTCTATCAATTATTCCAATTCCTCAGATGGTCATTTTATCTATCATTCCAATACCAGAAGGCTCAGTTCCACTTGCGGCAAAGGATTTGTTGAAGTATGTAATAATAATTCAGTATGTGCCAAGACTTCTACGGATCTATCCTATGTTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTATTTTCCGTAGAATCAGAGGTGCGGTGCTGGCGCAGACAGTTGAAGAATACTACATTCTCTCATGATTCCTACATGAGCTGTGGATATGGCATTCCTAGTGTTCTATCACTTCTCAATAATTCTTGCCCTTACACTGATCCTGATGAAACAGAAGACCTCACAGTTTTCAATTTTGGAATATTTTTACAAGCTCTAAAGTCTCGTGTGGTAGAATCAACTACAAATTTCCCTCATAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCTGTTGGGCAAAACCTACAGACAAGTACTTATGTTGGGGAGATAATCTTTGCTATCTTCATTGCTGTCTTTGGATTGGTTCTGTTCGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACAGTGGATGTCCCACCGTATGCTACCTGACTACTTGAAGGAAAGAATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAAGAGACATTAATTCGAAACCTCCCTAAAGATCTCAGAAGGGACATAAAGAGTCACCTTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATAAACAGTTGTTGGATGCAATGTGTGATAGACTTAAGCCAGTACTTTACACAGAGAAAAGTGACATTGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATCATGCGTGGAAAACTTGCCACTACCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGAGCTCAAGGCTGGTGACTTTTGTGGAGAAGAGCTCTTAACATGGGCATTGGATCCCAACTCCACCTCAAATCTACCTATTTCAACCAGAACAGTAAAAACTATATCAGAAGTGGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGCTTGTTGCTTCCCAATTTCGACGTCTTATAAACAGCAAACAGCTCAAGCACACTTTCAAGTTCTATTCCCTGCAATGGAGGACATGGGCTGCATGTTTCATACAAGCAGCTTGGCGTAGAAACAGGAAAAAAAAGAATGAGAGGTCATTACGTGAAGCAGAAGAGAGGCTACATGCTTATGAAAATGAGGAAGGGTCCTCACCAAGCTTTGTTGCCACAGTATATGCATCAAGGTTTGCATCCAATGCATTAAAGCCCTTGCGAAGTGGCAAACGCAACAGATTGCCACAGACACAGAGATTAATGCCATTCCTGCCTCAGAAGCCAGCTGAACCAGATTTCACTACTCAAATGACTTGA 1839 0.4029 MILLLMDFTKEKLSQVKCLDLDETLKITASVLRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELVDDPCTIVMRYLSSYFIIDILSIIPIPQMVILSIIPIPEGSVPLAAKDLLKYVIIIQYVPRLLRIYPMFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESEVRCWRRQLKNTTFSHDSYMSCGYGIPSVLSLLNNSCPYTDPDETEDLTVFNFGIFLQALKSRVVESTTNFPHKFFYCFWWGLRNVSSVGQNLQTSTYVGEIIFAIFIAVFGLVLFALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMSHRMLPDYLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKSHLCLDLLKKVPMFENMDKQLLDAMCDRLKPVLYTEKSDIVREGDPVDEMLFIMRGKLATTTTNGGRTGFFNSSELKAGDFCGEELLTWALDPNSTSNLPISTRTVKTISEVEAFALMPDDLKLVASQFRRLINSKQLKHTFKFYSLQWRTWAACFIQAAWRRNRKKKNERSLREAEERLHAYENEEGSSPSFVATVYASRFASNALKPLRSGKRNRLPQTQRLMPFLPQKPAEPDFTTQMT 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1616g00026 612 Gene3D Jelly Rolls 381 501 IPR014710 -
Gabi1616g00026 612 Coils Coil 536 556 - -
Gabi1616g00026 612 FunFam Cyclic nucleotide-gated ion channel 1 381 499 - -
Gabi1616g00026 612 Gene3D - 13 307 - -
Gabi1616g00026 612 FunFam Cyclic nucleotide-gated ion channel 1 310 374 - -
Gabi1616g00026 612 Pfam Ion transport protein 6 311 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi1616g00026 612 SMART cnmp_10 383 514 IPR000595 -
Gabi1616g00026 612 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 16 607 - -
Gabi1616g00026 612 MobiDBLite consensus disorder prediction 580 612 - -
Gabi1616g00026 612 ProSiteProfiles cAMP/cGMP binding motif profile. 383 467 IPR000595 -
Gabi1616g00026 612 SUPERFAMILY Voltage-gated potassium channels 21 305 - -
Gabi1616g00026 612 CDD CAP_ED 383 503 IPR000595 -
Gabi1616g00026 612 Gene3D Helix hairpin bin 310 374 - -
Gabi1616g00026 612 SUPERFAMILY cAMP-binding domain-like 312 499 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1616g00026 Gabi-Chr1616 172547 177048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1616g00026 17 609 Ion Channels AT5G53130 67.672 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1616g00026 K05391 - gmx:100795201 986.097