Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1616g00025 ATGACTGCAAAGGGACAAAAATCTGTGAGGTTTGAAAATGATCCTATTATTGATGGCAGGTTTGAAAATGATCCTATTACTGATGGATTTCACAAAAGAAAAGTTAAGCCAAGTGTAAGTCCTGTGAGTGATGTATCAATCAAAAGGATGGCTTCTGGGATCAATGTTCTTGATCCACAGGGGCCACTACTTCAGAAATGGAACAAAATTTTTGTAACCACTTGTGTGATGGCAATCTCTGTGGACCCGCTGTTCTTTTACATCCCTGTGATTGATGTCAACAGAAAATGCCTTGATTTGGATGAAACATTGAAGATTACTGCTAGTGTTCTTCGCACATTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAATTTCGAACCGGGTTTATTGCCCCTTCTTCTCGTGTATTTGGAAGGGGTGAGCTTGTTGATGATCCTTGTACCATAGTGATGAGATACTTAAGTTCTTACTTCATCATTGACATTCTATCAATTATTCCAATTCCTCAGATGGTCATTTTATCTATCATTCCAATACCAGAAGGCTCAGTTCCACTTGCGGCAAAGGATTTGTTGAAGTATGTAATAATAATTCAGTATGTGCCAAGACTTCTACGGATCTATCCTATGTTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTATTTTCCGTAGAATCAGAGGTGCGGTGCTGGCGCAGACAGTTGAAGAATACTACATTCTCTCATGATTCCTACATGAGCTGTGGATATGGCATTCCTAGTGTTCTATCACTTCTCAATAATTCTTGCCCTTACACTGATCCTGATGAAACAGAAGACCTCACAGTTTTCAATTTTGGAATATTTTTACAAGCTCTAAAGTCTCGTGTGGTAGAATCAACTACAAATTTCCCTCATAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCTGTTGGGCAAAACCTACAGACAAGTACTTATGTTGGGGAGATAATCTTTGCTATCTTCATTGCTGTCTTTGGATTGGTTCTGTTCGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACAGTGGATGTCCCACCGTATGCTACCTGACTACTTGAAGGAAAGAATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAAGAGACATTAATTCGAAACCTCCCTAAAGATCTCAGAAGGGACATAAAGAGTCACCTTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATAAACAGTTGTTGGATGCAATGTGTGATAGACTTAAGCCAGTACTTTACACAGAGAAAAGTGACATTGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATCATGCGTGGAAAACTTGCCACTACCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGAGCTCAAGGCTGGTGACTTTTGTGGAGAAGAGCTCTTAACATGGGCATTGGATCCCAACTCCACCTCAAATCTACCTATTTCAACCAGAACAGTAAAAACTATATCAGAAGTGGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGCTTGTTGCTTCCCAATTTCGACGTCTTATAAACAGCAAACAGCTCAAGCACACTTTCAAGTTCTATTCCCTGCAATGGAGGACATGGGCTGCATGTTTCATACAAGCAGCTTGGCGTAGAAACAGGAAAAAAAAGAATGAGAGGTCATTACGTGAAGCAGAAGAGAGGCTACATGCTTATGAAAATGAGGAAGGGTCCTCACCAAGCTTTGTTGCCACAGTATATGCATCAAGGTTTGCATCCAATGCATTAAAGCCCTTGCGAAGTGGCAAACGCAACAGATTGCCACAGACACAGAGATTAATGCCATTCCTGCCTCAGAAGCCAGCTGAACCAGATTTCACTACTCAAATGACTTGA 2076 0.4037 MTAKGQKSVRFENDPIIDGRFENDPITDGFHKRKVKPSVSPVSDVSIKRMASGINVLDPQGPLLQKWNKIFVTTCVMAISVDPLFFYIPVIDVNRKCLDLDETLKITASVLRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELVDDPCTIVMRYLSSYFIIDILSIIPIPQMVILSIIPIPEGSVPLAAKDLLKYVIIIQYVPRLLRIYPMFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESEVRCWRRQLKNTTFSHDSYMSCGYGIPSVLSLLNNSCPYTDPDETEDLTVFNFGIFLQALKSRVVESTTNFPHKFFYCFWWGLRNVSSVGQNLQTSTYVGEIIFAIFIAVFGLVLFALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMSHRMLPDYLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKSHLCLDLLKKVPMFENMDKQLLDAMCDRLKPVLYTEKSDIVREGDPVDEMLFIMRGKLATTTTNGGRTGFFNSSELKAGDFCGEELLTWALDPNSTSNLPISTRTVKTISEVEAFALMPDDLKLVASQFRRLINSKQLKHTFKFYSLQWRTWAACFIQAAWRRNRKKKNERSLREAEERLHAYENEEGSSPSFVATVYASRFASNALKPLRSGKRNRLPQTQRLMPFLPQKPAEPDFTTQMT 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1616g00025 691 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 46 686 - -
Gabi1616g00025 691 SUPERFAMILY cAMP-binding domain-like 391 578 IPR018490 -
Gabi1616g00025 691 CDD CAP_ED 462 582 IPR000595 -
Gabi1616g00025 691 Gene3D - 70 386 - -
Gabi1616g00025 691 SMART cnmp_10 462 593 IPR000595 -
Gabi1616g00025 691 SUPERFAMILY Voltage-gated potassium channels 58 384 - -
Gabi1616g00025 691 ProSiteProfiles cAMP/cGMP binding motif profile. 462 546 IPR000595 -
Gabi1616g00025 691 FunFam Cyclic nucleotide-gated ion channel 1 460 578 - -
Gabi1616g00025 691 Gene3D Jelly Rolls 460 580 IPR014710 -
Gabi1616g00025 691 MobiDBLite consensus disorder prediction 659 691 - -
Gabi1616g00025 691 Gene3D Helix hairpin bin 389 453 - -
Gabi1616g00025 691 FunFam Cyclic nucleotide-gated ion channel 1 389 453 - -
Gabi1616g00025 691 Pfam Ion transport protein 67 390 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi1616g00025 691 Coils Coil 615 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1616g00025 Gabi-Chr1616 172547 177149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1616g00025 48 688 Ion Channels AT5G53130 66.977 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1616g00025 K05391 - gmx:100795201 1075.46