Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1616g00023 ATGACTGCAAAGGGACAAAAATCTGTGAGGTTTGAAAATGATCCTATTACTGATGGATTTCACAAAAGAAAAGTTAAGCCAAGTGTAAGTCCTGTGAGTGATGTATCAATCAAAAGGATGGCTTCTGGGATCAATGTTCTTGATCCACAGGGGCCACTACTTCAGAAATGGAACAAAATTTTTGTAACCACTTGTGTGATGGCAATCTCTGTGGACCCGCTGTTCTTTTACATCCCTGTGATTGATGTCAACAGAAAATGCCTTGATTTGGATGAAACATTGAAGATTACTGCTAGTGTTCTTCGCACATTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAATTTCGAACCGGGTTTATTGCCCCTTCTTCTCGTGTATTTGGAAGGGGTGAGCTTGTTGATGATCCTTGTACCATAGTGATGAGATACTTAAGTTCTTACTTCATCATTGACATTCTATCAATTATTCCAATTCCTCAGATGGTCATTTTATCTATCATTCCAATACCAGAAGGCTCAGTTCCACTTGCGGCAAAGGATTTGTTGAAGTATGTAATAATAATTCAGTATGTGCCAAGACTTCTACGGATCTATCCTATGTTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTATTTTCCGTAGAATCAGAGGTGCGGTGCTGGCGCAGACAGTTGAAGAATACTACATTCTCTCATGATTCCTACATGAGCTGTGGATATGGCATTCCTAGTGTTCTATCACTTCTCAATAATTCTTGCCCTTACACTGATCCTGATGAAACAGAAGACCTCACAGTTTTCAATTTTGGAATATTTTTACAAGCTCTAAAGTCTCGTGTGGTAGAATCAACTACAAATTTCCCTCATAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCTGTTGGGCAAAACCTACAGACAAGTACTTATGTTGGGGAGATAATCTTTGCTATCTTCATTGCTGTCTTTGGATTGGTTCTGTTCGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACAGTGGATGTCCCACCGTATGCTACCTGACTACTTGAAGGAAAGAATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAAGAGACATTAATTCGAAACCTCCCTAAAGATCTCAGAAGGGACATAAAGAGTCACCTTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATAAACAGTTGTTGGATGCAATGTGTGATAGACTTAAGCCAGTACTTTACACAGAGAAAAGTGACATTGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATCATGCGTGGAAAACTTGCCACTACCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGAGCTCAAGGCTGGTGACTTTTGTGGAGAAGAGCTCTTAACATGGGCATTGGATCCCAACTCCACCTCAAATCTACCTATTTCAACCAGAACAGTAAAAACTATATCAGAAGTGGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGCTTGTTGCTTCCCAATTTCGACGTCTTATAAACAGCAAACAGCTCAAGCACACTTTCAAGTTCTATTCCCTGCAATGGAGGACATGGGCTGCATGTTTCATACAAGCAGCTTGGCGTAGAAACAGGAAAAAAAAGAATGAGAGGTCATTACGTGAAGCAGAAGAGAGGCTACATGCTTATGAAAATGAGGAAGGGTCCTCACCAAGCTTTGTTGCCACAGTATATGCATCAAGGTTTGCATCCAATGCATTAAAGCCCTTGCGAAGTGGCAAACGCAACAGATTGCCACAGACACAGAGATTAATGCCATTCCTGCCTCAGAAGCCAGCTGAACCAGATTTCACTACTCAAATGACTTGA 2046 0.4047 MTAKGQKSVRFENDPITDGFHKRKVKPSVSPVSDVSIKRMASGINVLDPQGPLLQKWNKIFVTTCVMAISVDPLFFYIPVIDVNRKCLDLDETLKITASVLRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELVDDPCTIVMRYLSSYFIIDILSIIPIPQMVILSIIPIPEGSVPLAAKDLLKYVIIIQYVPRLLRIYPMFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESEVRCWRRQLKNTTFSHDSYMSCGYGIPSVLSLLNNSCPYTDPDETEDLTVFNFGIFLQALKSRVVESTTNFPHKFFYCFWWGLRNVSSVGQNLQTSTYVGEIIFAIFIAVFGLVLFALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMSHRMLPDYLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKSHLCLDLLKKVPMFENMDKQLLDAMCDRLKPVLYTEKSDIVREGDPVDEMLFIMRGKLATTTTNGGRTGFFNSSELKAGDFCGEELLTWALDPNSTSNLPISTRTVKTISEVEAFALMPDDLKLVASQFRRLINSKQLKHTFKFYSLQWRTWAACFIQAAWRRNRKKKNERSLREAEERLHAYENEEGSSPSFVATVYASRFASNALKPLRSGKRNRLPQTQRLMPFLPQKPAEPDFTTQMT 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1616g00023 681 Gene3D Jelly Rolls 450 570 IPR014710 -
Gabi1616g00023 681 SUPERFAMILY cAMP-binding domain-like 381 568 IPR018490 -
Gabi1616g00023 681 MobiDBLite consensus disorder prediction 649 681 - -
Gabi1616g00023 681 SMART cnmp_10 452 583 IPR000595 -
Gabi1616g00023 681 Gene3D - 60 376 - -
Gabi1616g00023 681 Gene3D Helix hairpin bin 379 443 - -
Gabi1616g00023 681 ProSiteProfiles cAMP/cGMP binding motif profile. 452 536 IPR000595 -
Gabi1616g00023 681 Coils Coil 605 625 - -
Gabi1616g00023 681 FunFam Cyclic nucleotide-gated ion channel 1 379 443 - -
Gabi1616g00023 681 Pfam Ion transport protein 57 380 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi1616g00023 681 FunFam Cyclic nucleotide-gated ion channel 1 450 568 - -
Gabi1616g00023 681 CDD CAP_ED 452 572 IPR000595 -
Gabi1616g00023 681 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 36 676 - -
Gabi1616g00023 681 SUPERFAMILY Voltage-gated potassium channels 48 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1616g00023 Gabi-Chr1616 172547 177731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1616g00023 38 678 Ion Channels AT5G53130 66.977 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1616g00023 K05391 - gmx:100795201 1074.31