Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1616g00020 ATGGGCATTTTGAAGGTCCTTTTTCACTTCTTCATCTTTCCTGTCATATATGCCTCACATGATTGCCAAACTTCTATCTGTGGCAACGATAGTATCCTTATTCATTTCCCCTTTCAACTAGAAGGAGAGCAACATCCTTATTGTGGCTATCCTGGTTTCAATTTAATTTGTAACAATGATAACAAAACAGTTCTAAAACTTCCTTACTCTGGAGAATTCTTTGTACGCGACATAAACTATCTCAAACAGCAGATACATGTCTACGACCCTGATGCTTGCCTTCCAAAACGTCTTCTGAGCCTCAATTTTTCAGGTTCTCCCTTCATTGCCACTTCTTGTCGTAACTACACCTTCTTAAGCTGCCCATATCTGAACGCGGGGTCACAATTCATTCCTATTGATTGCCTCAGTAATTCAACAAATTTCGTATCAGCTATCCCTTCAGAGAACTTGTCCAATTCATTGCCTGTGTCTTGCTATGTTATTAGGAGTCTTTCAGTTCCTGTTGCAAGCCCGGGACAGTATGAGGAAAACCTCAGAGATGAACTTAGTCAAGATCTTCGATTAACATGGAATACACCTGACTGCAGATATTGCGAATCACAAATGTGTGGATTTGAAAGCAGTAACAGCAATCAAGTTTTCTGTTTCTCTAATTACCAAAAAGGTAATTCACAACGTGGACTTCAAGTTTTTAGAGTCATAGCATTATGCATAGCTGGACCAGCTGCTATCTTTGCTATTGTGATGGCAAGCTGTGTGTGTTACAATGATGGAATAGCCAATGCTCGCAGAAATGGTACTTCCCAGAGGTCTGCAATATCACCTCAACCTGCCATTGTTACTACGGGTCTGGATGAGTCAACCATTGAGTCTTATGAGAAGCTAGTAATTGGGGAGAGTCGAAGGGTTCCTGGACCCAATGATGGATCTTGCTGGATATGCTTGTCAGAGTACAACAGCAAAGACACAATCAGATGCATTCCTGAATGCAAACATTGTTTCCATACTGATTGCATAGATGAGTGGCTTCGCATGAACAGCACATGCCCAGTTTGCCGCAACTCTCCCACCCCTTCTCCTGTTCCTGTTATACATGTATCCACCAATGTCATTCATTAA 1122 0.4153 MGILKVLFHFFIFPVIYASHDCQTSICGNDSILIHFPFQLEGEQHPYCGYPGFNLICNNDNKTVLKLPYSGEFFVRDINYLKQQIHVYDPDACLPKRLLSLNFSGSPFIATSCRNYTFLSCPYLNAGSQFIPIDCLSNSTNFVSAIPSENLSNSLPVSCYVIRSLSVPVASPGQYEENLRDELSQDLRLTWNTPDCRYCESQMCGFESSNSNQVFCFSNYQKGNSQRGLQVFRVIALCIAGPAAIFAIVMASCVCYNDGIANARRNGTSQRSAISPQPAIVTTGLDESTIESYEKLVIGESRRVPGPNDGSCWICLSEYNSKDTIRCIPECKHCFHTDCIDEWLRMNSTCPVCRNSPTPSPVPVIHVSTNVIH 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1616g00020 373 CDD RING-H2_EL5-like 311 354 - -
Gabi1616g00020 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 359 IPR013083 -
Gabi1616g00020 373 Pfam Ring finger domain 311 354 IPR001841 -
Gabi1616g00020 373 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
Gabi1616g00020 373 SMART ring_2 312 353 IPR001841 -
Gabi1616g00020 373 SUPERFAMILY RING/U-box 304 358 - -
Gabi1616g00020 373 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 357 IPR046948 -
Gabi1616g00020 373 ProSiteProfiles Zinc finger RING-type profile. 312 354 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1616g00020 Gabi-Chr1616 163734 167373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1616g00020 22 359 C3H Transcription Factor Family AT2G25410 43.516 1.21e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1616g00020 - - aprc:113851081 591.652