Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1616g00018 ATGATAATTAAGCGGACTATGAAAACTGAAATGCCGAACCTGAAACGGTGTAAACTGGACGAGGCAGATTCCGAGGGTAAGAAAAAGCGAAGGGTGAATGGGTTTTACTCTCTTGGTATGCCTGGTGATGCTGAAGATTTTAGTAGCGGTTCTGGCTCTTGGAGCAGTGAAGGTTCGTACTGGGGTGGTGGTGTTGGTGGGGGTGGTGAGGTTCAGTCTAATTCAAATTCTGTAAGGTTGAATGGCAAGACGGTGCAAGGCCGGGGCTCCCAAGCGCCGCGGCCTCCGCTGTTGCGGTCGTCGCGTGGCCGCGTTCAAATGCTTCCTTCGAGGTTCAGTGACTCAGTTATTGATAATTGGAAGGATCGAGGAATCAAAACGGAGGATGGAGACTCCATCTTTGATGAAGATTATAGGGAGGGTATTAGTGCAAAGGTATTTGTAAAACTGGATAAGAGTGATAACCACCATGGCTTGGAAAATTCTGATTTGGGTGGCATAGGTTTAAATGGTTTTGATAAAAAGGAGAATGCTGATTCGTCTAGTATCAGGACGGTGAAAACTGATAGTAATACGTCTGGTATTAGCTTTGAAGGTGTAGACCAAAAGCCTAATGGGAATGCTGGAAAGAGGAAAGAGGTTTACAAGCCTGAGGATTTTGCTTTGGGTGATATAGTTTGGGCAAAATGTGGGAAGAGATATCCTGCTTGGCCTGCTCTAGTCATTGATCCCATCTTGGAGGCTCCCAAATCCGTGCTGAGTTGTTGTGTTCCCGGTGCACTGTGCGTTATGTTTTTTGGTTATTCCAAAAATGGAACGCAAAGGGACTATGCATGGGTGAAGCAGGGAATGGTATTTCCGTTCTTGGAATTCATGGACAGGTTCCAGGGGCAGACGCGGTTGTACAAGAGCAAACCAAGTGACTTTCGCATGGCACTGGAAGAGGCAATGTTGGCAAAAGATGATTTTCTTGAATCACAGTTGGAAGCAGAGGAAGAAGTAACTACTGTAAAAGCTCATCCTGATGGACTTACAGAGGCCACGGGTTCATGTTTTGATCAGGAATATTACTGCGAGGGTCAGGATACAAGATCTTGTGCTGGCTGTGGTTTGATGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGCTGTGCGCCTCAATTTTATTGCAAACATTGTGCTAAGTTACGTAAATCAAAGCAATATTGTGGCGTTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCCGGGTGTGCTAAAATTTCCAGCAAACTTTTAAAGGATCTGGAAAATACAGATTACTATTGTCCAGATTGCAAGGGAAAATTCATTTGTAACTCACCAGCATCACAAACATACAAGTCCAAAATCAATTCAATAGAGAAGAGCCAAAAACCTATGATACCTGAGAAGGTAACGGTGGTGTGCAATGGCATGGAAGGAATTTACATCCCAAATCTTCATTTAGTTATGTGCAAGTGTGGCTCTTGTGGTTCAAGGAAGCAGACCCTGACTGAATGGGAAAGACATACAGGTTGCAGAGCCAAAAAATGGAAACATAGTGTGAAAGTTAAAAGTACAATGCTACCGCTAGAAAACTGGGTATGCATTAGTTCTTGCTATATCACAGAAAACGTTTCACAAAATGGAGTTCCCCAGCAGTTAGATCAGCAGCAGGTGCTTGCTTTTTTGCAAGAGAAGTATGAGCCAGTTCATGCAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTTGAAGATTGGGAAGATAACAAAATTATTATCTGCAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGAGCAAAGAGTGTTCAGGATTTTACTACTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTTTGTCCAGTAAAAGGTGGTGCACTAAAGCCAACTGATGTTGAGATGTTGTGGGTTCATGTAACATGCGCTTGGTTTCGTCCTGAAGTTGTTTTCCAAAACCATGAGGCCATGGAACCTGCCTTAGGAATCCTCAGAATTCCTCCTAATTCCTTTGTTAAGACTTGTGTGATCTGTAAACAAAGCCATGGTTCCTGTACAACTTGCTGCAAGTGTGCTACTCATTTTCATGTGACGTGCGCATCAAGAGCGGGATATAGTACGGAATTGCATTCTGTGGAGAAGAATGGGACTCAAATAACAAAGAAGTTAATATACTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGTACTGGTTGTACATACATCCCTGGGGGTTTTCTCTCCCAGAACTTCAATCCAAAATCATAAAGGATCCTTAAGGGGATCAAGACTGGTTTCATCAAAGAATGTAGAGCTTAATGAATATTCATCCACTGAAAATAACAAGGTTGAGCCACTGTCTGCTGCCAGATGTCGTGTGTACCAAAGGTCTCCTAATAAGAGGGCTGATTTGCCAATAATTCACTTACTGAGGGGACCCAGCCTTCATTCTTTAGGTGCAATAACTCAATTGAACAGCTATAAGGATGCTGAAGATTCTAAAGCATTTACTTCTTTCAAGGAACGTCTTGACCATTTACAGAAAATGGAAAAACTTAGAGTTTGCTTTGGAAAATCGGGTATTCATGGATGGGGCCTCTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGTGGTGAGCAGGTAAGGCGTAGTGTTGCTGATCTCAGGGAAGCAAAATACCGTTCAGAAGACAAAGATTGCTATCTGTTCAAGATCAGTGAGGAAGTGGTAATTGATGCAACGCACAGGGGCAATATTGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTACGCAAGGATTATGAGCTTGGGTGATCAGGAGAACCGGATTGTTCTTATTGCCAAGACCAATGTTTCTGCTGGTCAAGAGCTAACGTATGATTACTTGTTCGATCCAGATGAGCAGGATGAACTGAAAGTTCCCTGCTTTTGCAAAGCCCCCAATTGTAGGAAATTTATGAACTAG 3084 0.4309 MIIKRTMKTEMPNLKRCKLDEADSEGKKKRRVNGFYSLGMPGDAEDFSSGSGSWSSEGSYWGGGVGGGGEVQSNSNSVRLNGKTVQGRGSQAPRPPLLRSSRGRVQMLPSRFSDSVIDNWKDRGIKTEDGDSIFDEDYREGISAKVFVKLDKSDNHHGLENSDLGGIGLNGFDKKENADSSSIRTVKTDSNTSGISFEGVDQKPNGNAGKRKEVYKPEDFALGDIVWAKCGKRYPAWPALVIDPILEAPKSVLSCCVPGALCVMFFGYSKNGTQRDYAWVKQGMVFPFLEFMDRFQGQTRLYKSKPSDFRMALEEAMLAKDDFLESQLEAEEEVTTVKAHPDGLTEATGSCFDQEYYCEGQDTRSCAGCGLMLPCKTMKKIKDSSCAPQFYCKHCAKLRKSKQYCGVCKKIWHHSDGGNWVCCDGCNVWVHAGCAKISSKLLKDLENTDYYCPDCKGKFICNSPASQTYKSKINSIEKSQKPMIPEKVTVVCNGMEGIYIPNLHLVMCKCGSCGSRKQTLTEWERHTGCRAKKWKHSVKVKSTMLPLENWVCISSCYITENVSQNGVPQQLDQQQVLAFLQEKYEPVHAKWTTERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKSVQDFTTWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVVFQNHEAMEPALGILRIPPNSFVKTCVICKQSHGSCTTCCKCATHFHVTCASRAGYSTELHSVEKNGTQITKKLIYCAVHRVPNPDSVLVVHTSLGVFSPRTSIQNHKGSLRGSRLVSSKNVELNEYSSTENNKVEPLSAARCRVYQRSPNKRADLPIIHLLRGPSLHSLGAITQLNSYKDAEDSKAFTSFKERLDHLQKMEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGEQVRRSVADLREAKYRSEDKDCYLFKISEEVVIDATHRGNIARLINHSCMPNCYARIMSLGDQENRIVLIAKTNVSAGQELTYDYLFDPDEQDELKVPCFCKAPNCRKFMN 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1616g00018 1027 SMART PostSET_3 1011 1027 IPR003616 -
Gabi1616g00018 1027 MobiDBLite consensus disorder prediction 183 200 - -
Gabi1616g00018 1027 CDD PWWP_AtATX3-like 223 323 - -
Gabi1616g00018 1027 ProSitePatterns Zinc finger PHD-type signature. 596 641 IPR019786 -
Gabi1616g00018 1027 CDD SET_SETD1-like 874 1023 - -
Gabi1616g00018 1027 SUPERFAMILY FYVE/PHD zinc finger 593 658 IPR011011 -
Gabi1616g00018 1027 ProSiteProfiles SET domain profile. 885 1002 IPR001214 GO:0005515
Gabi1616g00018 1027 SMART PWWP_4 220 289 IPR000313 -
Gabi1616g00018 1027 Pfam SET domain 896 1001 IPR001214 GO:0005515
Gabi1616g00018 1027 CDD PHD_ATX3_4_5_like 595 641 IPR042011 -
Gabi1616g00018 1027 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1027 IPR025780 -
Gabi1616g00018 1027 SMART set_7 885 1008 IPR001214 GO:0005515
Gabi1616g00018 1027 Gene3D - 209 330 - -
Gabi1616g00018 1027 CDD PHD_TCF19_like 405 455 - -
Gabi1616g00018 1027 MobiDBLite consensus disorder prediction 180 211 - -
Gabi1616g00018 1027 ProSiteProfiles Zinc finger PHD-type profile. 593 644 IPR019787 -
Gabi1616g00018 1027 FunFam Histone-lysine N-methyltransferase 859 1027 - -
Gabi1616g00018 1027 ProSiteProfiles Zinc finger PHD-type profile. 402 458 IPR019787 -
Gabi1616g00018 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 763 IPR013083 -
Gabi1616g00018 1027 ProSiteProfiles Post-SET domain profile. 1011 1027 IPR003616 -
Gabi1616g00018 1027 ProSiteProfiles PWWP domain profile. 222 291 IPR000313 -
Gabi1616g00018 1027 Gene3D SET domain 799 1027 IPR046341 -
Gabi1616g00018 1027 SUPERFAMILY FYVE/PHD zinc finger 402 459 IPR011011 -
Gabi1616g00018 1027 Pfam PHD-finger 608 642 - -
Gabi1616g00018 1027 Pfam PHD-zinc-finger like domain 649 761 - -
Gabi1616g00018 1027 ProSiteProfiles Extended PHD (ePHD) domain profile. 647 762 IPR034732 -
Gabi1616g00018 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 590 644 IPR013083 -
Gabi1616g00018 1027 FunFam Histone-lysine N-methyltransferase 645 764 - -
Gabi1616g00018 1027 SMART PHD_3 404 456 IPR001965 -
Gabi1616g00018 1027 SMART PHD_3 706 762 IPR001965 -
Gabi1616g00018 1027 SMART PHD_3 595 642 IPR001965 -
Gabi1616g00018 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 459 IPR013083 -
Gabi1616g00018 1027 SUPERFAMILY SET domain 879 1024 IPR046341 -
Gabi1616g00018 1027 MobiDBLite consensus disorder prediction 73 88 - -
Gabi1616g00018 1027 PANTHER PHD FINGER PROTEINS 11 456 - -
Gabi1616g00018 1027 MobiDBLite consensus disorder prediction 73 98 - -
Gabi1616g00018 1027 Pfam PWWP domain 223 318 IPR000313 -
Gabi1616g00018 1027 Pfam PHD-finger 404 457 IPR019787 -
Gabi1616g00018 1027 SUPERFAMILY Tudor/PWWP/MBT 213 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1616g00018 Gabi-Chr1616 146322 154961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1616g00018 347 429 EF-hand Containing Proteins AT5G28340 50.602 1.53e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi1616g00018 zf-HC5HC2H_2 5.7e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1616g00018 - - gmx:100793624 1630.15