Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1616g00006 ATGGAATCAAGTAGCGTTGATAGTACTGTGTCATCATTGATCATGATGGATGAGGATGTTGTGCATCCCCATCAGTTTTCTTCAGTCACCAAGCTACATAGCAATGGTCCTGCTGCTACCAGTGTTCATGAGCTTCTTGAATGCCCTGTTTGCACCAATTCAATGTACCCTCCAATCCACCAGTGCCACAATGGGCATACCCTTTGTTCAACTTGTAAGACAAGGGTACACAACCGGTGCCCAACTTGTAGACAGGAACTGGGTGATATAAGGTGTCTAGCATTGGAAAAGATAGCAGAGTCACTTGAACTGCCTTGCAGATACAGCTCTCATGGGTGTCCAGAGATATTTCCTTATTATAGCAAACTCAAACATGAGTCTGTTTGTAACTTCAGACCTTACAACTGCCCCTACGCTGGATCAGACTGCTCTGTTGTTGGGGATATTCCATACCTTGTTACTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACAGTCTTCCACTGTTTTGGTCAGTATTTTTGTCTCCATTTCGAAGCTTTCCAGCTTGGTATGGCTCCGGTTTACATGGCATTCCTCCGTTTCATGGGCGACGAAAGAGAGGCTCGGAGCTACAGCTACAGCCTGGAGGTAGGAGGAAATGGACGTAAACTAACTTATGAGGGCAGTCCAAGAAGCATTAGAGATAGCCATAAGAAAGTTAGAGACAGTCATGATGGCCTCATTGTATATCGGAACATGGCACTTTTCTTCTCAGGTGGGGATAGGAAGGAGTTGAAGTTACGAGTAACAGGAAGGATATGGAAAGAACAACAGAACTCTGAAGGTGGAAGTTTATCATATTCCAAATCTCTGAAGCTAATTCAATTTTAG 948 0.4378 MESSSVDSTVSSLIMMDEDVVHPHQFSSVTKLHSNGPAATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYSSHGCPEIFPYYSKLKHESVCNFRPYNCPYAGSDCSVVGDIPYLVTHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARSYSYSLEVGGNGRKLTYEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGDRKELKLRVTGRIWKEQQNSEGGSLSYSKSLKLIQF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1616g00006 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 156 IPR013083 -
Gabi1616g00006 315 Pfam Seven in absentia protein family 90 289 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gabi1616g00006 315 FunFam E3 ubiquitin-protein ligase SINAT5-like 157 289 - -
Gabi1616g00006 315 ProSiteProfiles Zinc finger SIAH-type profile. 101 161 IPR013010 GO:0008270
Gabi1616g00006 315 ProSiteProfiles Zinc finger RING-type profile. 48 84 IPR001841 -
Gabi1616g00006 315 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 160 289 IPR008974 GO:0005515
Gabi1616g00006 315 SUPERFAMILY RING/U-box 39 87 - -
Gabi1616g00006 315 CDD RING-HC_SIAHs 46 84 - -
Gabi1616g00006 315 FunFam E3 ubiquitin-protein ligase SINAT3 98 156 - -
Gabi1616g00006 315 SUPERFAMILY TRAF domain-like 101 293 - -
Gabi1616g00006 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 100 IPR013083 -
Gabi1616g00006 315 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 34 295 - -
Gabi1616g00006 315 CDD Sina 162 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1616g00006 Gabi-Chr1616 60427 73542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1616g00006 28 296 C3H Transcription Factor Family AT2G41980 76.952 1.30e-160 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1616g00006 K04506 - gmx:100792687 592.038