Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1615g00005 ATGTCTAGCCCACAAGTGAAGAGCATTGTCCACATCAACCGCACCAAACTCGTCGTACCAGCGGATCAATACCCACCGAGGCATCCATTCCTAAAGGTGCTGAGGATAAGCTTCACAGACAATGATGCTACCGACTCCTCCAGCGATGAAGAAGAAGTGTTCGAAAAGAAGTGCGTGAATGAGAATATTTTTGAGAAGCGCACCAGCCAAAATGACGGCACAATTTCGAAAAGGAGAAATAGGAGCACCTTAAAAAAACATGCATCTTCCTCCTCTGCCACGAAGTATCGGGGAGTGAGGCAAAGGCTATGGGGAAAATGGGTTGCTGAGATAAGAGATCCATCACAACGAAAACGGTTGTGGTTGGGCACCTATGACACAGCTTTGGAAGCTGCCGTGGCCTACAACAACGCAGCCATTAAGCTGCGTGGACCTGATACGCTCATCAATATCTTACCGCCACCAACCGGGATCATGTGCTCGCCGGAAAATACAAACCCTCAGGCACCTGAAACTTCAGCCACAACAATCGAGGGTTAG 540 0.4889 MSSPQVKSIVHINRTKLVVPADQYPPRHPFLKVLRISFTDNDATDSSSDEEEVFEKKCVNENIFEKRTSQNDGTISKRRNRSTLKKHASSSSATKYRGVRQRLWGKWVAEIRDPSQRKRLWLGTYDTALEAAVAYNNAAIKLRGPDTLINILPPPTGIMCSPENTNPQAPETSATTIEG 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1615g00005 179 Gene3D AP2/ERF domain 94 152 IPR036955 GO:0003700|GO:0006355
Gabi1615g00005 179 SMART rav1_2 95 158 IPR001471 GO:0003700|GO:0006355
Gabi1615g00005 179 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 167 - -
Gabi1615g00005 179 FunFam Ethylene-responsive transcription factor 2 94 153 - -
Gabi1615g00005 179 CDD AP2 94 150 IPR001471 GO:0003700|GO:0006355
Gabi1615g00005 179 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Gabi1615g00005 179 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Gabi1615g00005 179 MobiDBLite consensus disorder prediction 69 93 - -
Gabi1615g00005 179 Pfam AP2 domain 94 144 IPR001471 GO:0003700|GO:0006355
Gabi1615g00005 179 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700|GO:0006355
Gabi1615g00005 179 SUPERFAMILY DNA-binding domain 95 151 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1615g00005 Gabi-Chr1615 61026 61565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1615g00005 32 176 AP2-EREBP Transcription Factor Family AT4G27950 49.367 4.31e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1615g00005 AP2 4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1615g00005 - - gmx:100779905 157.147