Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1611g00002 ATGAATGAGGCTGATGGTAGAGTAACTGAGGTAAAGAATGTTCACCGGACTAGTGTAGCAGCCAGTGATAAAGAAAATGGATTATTTTTTGGAAGCTTCACAAGCTTCCACAAGCAGCCAGTGATTTTGGTTTTTCTGTCTCTTGTTGGCGGCGCGGAGTATGCGTGTAAGACTCTGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTGGGGTTGTGACTCTGCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTGTGCTCTGGGGGAAAACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTTACTGCTTCGGGGGAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAAGGGTCAGAACTTGACGGGTTTGGTTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATACTCAGAAAAGGCGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGATTGGTGTTCTTCCATTTAAAGGGGATTCACAAGAAGCAGTTTTTGAGGCTATTAAGAATTCCAAGCTAGAGTTCCAAACCGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAAGTACTTAATGGTAGCGAGGAGTTTGACCTCGAGTCAATTATATATAGCAATGGCGTTTACTTTGAAAATGGAGTTCACAGTCTTGTCATTTTCACTGGAAAGGAAAAAACAGCTACTTGTGTTTAG 933 0.4459 MNEADGRVTEVKNVHRTSVAASDKENGLFFGSFTSFHKQPVILVFLSLVGGAEYACKTLKKGDETVYREVEIMQHLSGHPGVVTLLAVYEEADCSHLVMELCSGGKLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGEIKLADFGLAMRISKGQNLTGLVGSPAYVAPEVLLGRYSEKADIWSAGVLLHALLIGVLPFKGDSQEAVFEAIKNSKLEFQTGMWESISKPARDLVGRMLTRDISARITADEVLNGSEEFDLESIIYSNGVYFENGVHSLVIFTGKEKTATCV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1611g00002 310 CDD STKc_CAMK 51 272 - -
Gabi1611g00002 310 SMART serkin_6 36 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1611g00002 310 Gene3D Transferase(Phosphotransferase) domain 1 41 288 - -
Gabi1611g00002 310 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 272 - -
Gabi1611g00002 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Gabi1611g00002 310 SUPERFAMILY Protein kinase-like (PK-like) 48 272 IPR011009 -
Gabi1611g00002 310 Pfam Protein kinase domain 53 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1611g00002 310 ProSiteProfiles Protein kinase domain profile. 1 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1611g00002 310 FunFam Maternal embryonic leucine zipper kinase 48 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1611g00002 Gabi-Chr1611 21021 24337 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1611g00002 51 271 EF-hand Containing Proteins AT1G50700 46.753 4.01e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1611g00002 Pkinase 2.2e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1611g00002 - - gmx:100812729 392.889