Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1611g00001 ATGAAGAGAGTAAGGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATAGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGGAAATGCAAGTATATCGACGAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAACACAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATATAAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATAATAATAACAGCAGGGATTTGAACTTGCAGCGCTTTCATGAGAAAAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCATAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAATGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAATCACTTAAAGTGA 1518 0.3999 MKRVRDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLNISNMYRKEHKDIGEIYSEVATLFKDHRDLLEEFTRFLPDSFAAPSTQHAPDARNSLQRFSERSSMAPMMREMQVYRRKRLPSHDRERDLSVEHPEMDDDNTMMNMHKKRRKRESKDIRINRDQDEREPDNNNSRDLNLQRFHEKKKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASHRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNHLK 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1611g00001 505 ProSiteProfiles PAH domain profile. 211 281 IPR003822 GO:0006355
Gabi1611g00001 505 MobiDBLite consensus disorder prediction 157 185 - -
Gabi1611g00001 505 SUPERFAMILY PAH2 domain 9 81 IPR036600 GO:0006355
Gabi1611g00001 505 FunFam Paired amphipathic helix protein SIN3 208 283 - -
Gabi1611g00001 505 FunFam Paired amphipathic helix SIN3-like protein 11 82 - -
Gabi1611g00001 505 SUPERFAMILY PAH2 domain 212 279 IPR036600 GO:0006355
Gabi1611g00001 505 MobiDBLite consensus disorder prediction 114 148 - -
Gabi1611g00001 505 Coils Coil 405 435 - -
Gabi1611g00001 505 Coils Coil 292 312 - -
Gabi1611g00001 505 Gene3D Paired amphipathic helix 209 282 IPR036600 GO:0006355
Gabi1611g00001 505 MobiDBLite consensus disorder prediction 89 104 - -
Gabi1611g00001 505 Pfam Sin3 family co-repressor 334 426 IPR013194 -
Gabi1611g00001 505 Gene3D Paired amphipathic helix 11 82 IPR036600 GO:0006355
Gabi1611g00001 505 ProSiteProfiles PAH domain profile. 12 82 IPR003822 GO:0006355
Gabi1611g00001 505 PANTHER SIN3B-RELATED 9 505 IPR039774 GO:0003714
Gabi1611g00001 505 Pfam Paired amphipathic helix repeat 35 79 IPR003822 GO:0006355
Gabi1611g00001 505 Pfam Paired amphipathic helix repeat 233 278 IPR003822 GO:0006355
Gabi1611g00001 505 SMART hdac_interact2seq4b 332 432 IPR013194 -
Gabi1611g00001 505 MobiDBLite consensus disorder prediction 83 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1611g00001 Gabi-Chr1611 18385 21868 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi1611g00001 Sin3_corepress 6.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1611g00001 K11644 - gmx:100807181 797.734