Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1610g00002 ATGGAATTGTGCTCTGGGGGAAGACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGTGTCAGAACTTGACGGGTTTGGCTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATACTCAGAAAAGGCGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGTGTTCTTCCATTTAAAGGGGATTCACAAGAAGCAGTTTTTGAGGCTATTAAGAATTCCAAGCTAGAGTTCCAAACCGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAAGTACTTAGACATCCATGGATATCTTTCTACACAGAACGTACATTGAAGATCCTGCCCGTTGAATCAAAGTTGAAGCACCAAAATGGAGCTGCTTGCCACAACTTTGTTGCTGCACCTGAACCTAGGTTAGGAAGAAACAGGATGGATGATGGGTTCCTTAATGAGGTTTCAAGCCTTTCTTCATCATCTGAAAGTTGCAATTCAGAATATCATGATGTTTGTGTGTGGATTGATGCACTTGCCAATGCAATTTCACATGTAAGGATATCTGAACCAAAGAAGAGCAAGTTGTGGGCAGTTCCAATTCATCAACAAGGTTTATATAACATGAGGGCTAACCTCTGTAAAGCATTTTGA 810 0.4309 MELCSGGRLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILCQNLTGLAGSPAYVAPEVLLGRYSEKADIWSAGVLLHALLVGVLPFKGDSQEAVFEAIKNSKLEFQTGMWESISKPARDLVGRMLTRDISARITADEVLRHPWISFYTERTLKILPVESKLKHQNGAACHNFVAAPEPRLGRNRMDDGFLNEVSSLSSSSESCNSEYHDVCVWIDALANAISHVRISEPKKSKLWAVPIHQQGLYNMRANLCKAF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1610g00002 269 ProSiteProfiles Protein kinase domain profile. 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1610g00002 269 Pfam Protein kinase domain 1 56 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1610g00002 269 Pfam Protein kinase domain 59 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1610g00002 269 SMART serkin_6 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1610g00002 269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 43 55 IPR008271 GO:0004672|GO:0006468
Gabi1610g00002 269 Gene3D Transferase(Phosphotransferase) domain 1 58 188 - -
Gabi1610g00002 269 Gene3D Transferase(Phosphotransferase) domain 1 1 57 - -
Gabi1610g00002 269 SUPERFAMILY Protein kinase-like (PK-like) 1 196 IPR011009 -
Gabi1610g00002 269 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1610g00002 Gabi-Chr1610 9215 10991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1610g00002 1 158 EF-hand Containing Proteins AT4G35310 43.646 2.75e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1610g00002 Pkinase 2.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1610g00002 - - gmx:100809977 379.793