Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1608g00003 ATGGAGTTGAGCATGTTGGCTTCATTCCCTGGTTCCGTAAAACCCTCTGTAAGAGCGAATCTTTCTCTTCCTAAGCTTACCTCTCGGCATGAGTACCCTCTTGCAAGCAAAATCATTGTTAAAAATTTATCATATTCTACTGGTGAGACTACTTTGCAGAAGGACTTTTCAAATTTTGGCCAGATAGCTGAAGTTAAAGTGGTGAAAGATGTGAACACAAAAAGATCTAAGGGATATGCTTTTATTCAATATACATGTCAAGATGATGCCATGCTTGCACTTGAAACCATGGATCAGAAGGATTTGTATGGTCGGAAGATTAGTGTAGAAATTGCAAGACTAGGTTGGTCTGATTTTGATGCACGCCCAAGGACCTCAGGGCCCCCAAAAAAGTGGAATTTGCCAGAGGAAGGGGAAGTGGTAGATTGCTGGTACTGA 438 0.4155 MELSMLASFPGSVKPSVRANLSLPKLTSRHEYPLASKIIVKNLSYSTGETTLQKDFSNFGQIAEVKVVKDVNTKRSKGYAFIQYTCQDDAMLALETMDQKDLYGRKISVEIARLGWSDFDARPRTSGPPKKWNLPEEGEVVDCWY 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1608g00003 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Gabi1608g00003 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Gabi1608g00003 145 FunFam glycine-rich RNA-binding protein 4, mitochondrial 26 139 - -
Gabi1608g00003 145 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 35 135 - -
Gabi1608g00003 145 Gene3D - 22 138 IPR012677 -
Gabi1608g00003 145 SUPERFAMILY RNA-binding domain, RBD 20 118 IPR035979 GO:0003676
Gabi1608g00003 145 SMART rrm1_1 37 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1608g00003 Gabi-Chr1608 5511 9511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1608g00003 36 98 Eukaryotic Initiation Factors Gene Family AT4G34110 36.508 3.56e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1608g00003 - - gmx:100305971 230.72