Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1606g00025 ATGGATGTAAAAAGAAGAGGAAGCAACACCATCACCACCACCACCACCTTAAGTGAGGACGAAATGGACCTCCGAAGAGGTCCTTGGACCGTCGATGAGGACCTCGCTCTCATGAATTACATTGCCACTCACGGCGAAGGTCGTTGGAATTCCCTCGCCCTCTCTGCCGGCCTCAAACGAACAGGGAAGAGTTGCAGATTGAGGTGGCTTAACTATCTCCGTCCTGATGTTCGACGTGGAAACATCACGCTTGAAGAACAACTTTTGATTCTTGAACTCCATACTCGTTGGGGAAACAGATGGTCGAAAATTGCGCAGTATTTGCCGGGAAGAACTGACAATGAGATCAAGAACTATTGGAGGACCCGTGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTTAATAGCAAGCAATTTAAGGACACCATGCGCTACCTTTGGATGCCGAGGCTCGTCGAACGCATTCAAGCAGCCGCAGCTGCCTCATCCGCCGCCAACACCACCGCCACCGCCTCTTCTCCAACTTTATCAACCACCACAAGTAATGTCACAGCCAATAACGGTTACAACTTCAGCAACAACCTTAATAATAACAATATTGAGGTTCAAAATGGAAAAATGGGGTTAAGTACTAAACCTGCAGTTATGAGCAATGATTTTGTGTGTTCACAACAGGTGACACAAAGTTATACCCCAGAGAATAGCAGCACAGGTGCATCATCGGATTCGTTTGGGACAACAACTCAAGTCTCAACAATATCGGATTTGAGTGATTATTATTACAGTGCTGCCCCAGTTAGTAGTAACAATAATAAACCTAATCCTAATCCTGTAGATTATTATCAATTACCCTCTCACTTTAGCTACTCGGATTGCATCACAAGCCCTTCTGGTTTGTTCGATTTCCAAGCCATGGAACCAAACACCCCGTGGATGCAAAACGGGGACTCATCCGACAATTTTTGGAATGTTGAAAACATGTTGTTTTTGCAGCAGCAACTTATGAATGACAACATGTAA 1023 0.4506 MDVKRRGSNTITTTTTLSEDEMDLRRGPWTVDEDLALMNYIATHGEGRWNSLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAAASSAANTTATASSPTLSTTTSNVTANNGYNFSNNLNNNNIEVQNGKMGLSTKPAVMSNDFVCSQQVTQSYTPENSSTGASSDSFGTTTQVSTISDLSDYYYSAAPVSSNNNKPNPNPVDYYQLPSHFSYSDCITSPSGLFDFQAMEPNTPWMQNGDSSDNFWNVENMLFLQQQLMNDNM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1606g00025 340 CDD SANT 28 73 IPR001005 -
Gabi1606g00025 340 Gene3D - 23 79 - -
Gabi1606g00025 340 SMART sant 78 126 IPR001005 -
Gabi1606g00025 340 SMART sant 25 75 IPR001005 -
Gabi1606g00025 340 FunFam Myb transcription factor 26 78 - -
Gabi1606g00025 340 CDD SANT 99 122 IPR001005 -
Gabi1606g00025 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 77 IPR017930 -
Gabi1606g00025 340 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Gabi1606g00025 340 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Gabi1606g00025 340 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 207 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi1606g00025 340 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Gabi1606g00025 340 Gene3D - 83 146 - -
Gabi1606g00025 340 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Gabi1606g00025 340 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Gabi1606g00025 340 FunFam MYB transcription factor 83 146 - -
Gabi1606g00025 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 128 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1606g00025 Gabi-Chr1606 243157 245099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1606g00025 19 331 MYB Transcription Factor Family AT3G06490 53.550 6.52e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1606g00025 Myb_DNA-binding 6.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1606g00025 K09422 - gmx:100791349 445.277