Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1606g00020 ATGAATCTTTTTCTGTGTCTCCGGTCCCTATGTTTCTTTCTTTTAACTACTTCGTTCATTAAAGCATCAGAAATAAATGTGGAAAACTATGAATCTGATAGAATAATCCATCTTCCTGGCCAACCTTCAAACCCCTCAGTTTCACAATTTTCAGGTTATGTCACTGTCAATGAAGCCCATGGGAGGGCCCTTTTCTACTGGTTCTTTGAAGCTCAATCTGAACCGTCCAAGAAGCCTCTCCTTCTCTGGCTTAATGGAGGACCCGGATGCTCCTCCATTGGGTATGGTGCAGTTGTTGAGATAGGACCTCTACTAGTCAACAAAAATGGTGAAGGACTACATTTCAACAACTACTCCTGGAATCAAGAAGCAAATTTGTTATTTGTGGAGTCCCCTGTTGGAGTTGGTTTTTCTTACACTAACACATCCTCTGATCTCACCAAATTAGAGGATAATTTTGTGGCTGAGGATGCTTACAATTTCTTGGTGAATTGGTTACAAAGATTCCCACAGTTCAAATCCCGGGACTTTTATATAGCAGGAGAAAGCTATGCTGGCCACTATATCCCTCAGCTTGCAGAGCTAGTCTTTGATCGAAACAAAGATAGAAGCAAATACCCCTTTATTAATTTTAAAGGTTTTATTGCAGGGAATCCAGAAACTGAAGATTACTATGACTATAAAGGCCTGCTAGAATATGCATGGAGCCATGCAGTTATATCAGACCAGCAATACGACAAAGCAAAACAAGTATGTGATTTTAAACAATTCAATTGGTCTAATGAATGCAATCAGGTCATGAACGAAGTCTTCCAAGATTACTCAGAAATTGACATATACAACATTTATGCCCCGGCTTGTCATCTGAATAGCACATCCTCAATGGCTAATGATATTAACAGTAACGGCCCTGAATCACTCACAAAGGTGAGAAATGATTATAGAATAAAGAGGATGAGAATTTTTGGGGGCTATGACCCGTGTTATTCCACATATGCACAAGAATATTTCAATAGGTTAGATGTTCAGTCATCTCTTCATGCAAATACTAAAAGAGCAAACACTAAATTTACATGGAACGTTTGCAATAATTCCATATTGAGGACTTACAACTTCTCTGTTTTTTCGGTCCTACCTATCTACACCAAACTCATCAAGGGTGGACTTCAGATATGGATTTTCAGTGGAGATGCAGACGGCAGAGTACCTGTGATAGGGACACGATACTGCGTTGAGGCTCTTGGATTACCTCTCAAGTCTAGTTGGCGATCTTGGTACCATGATGATCAGGTTGGGGGAAGGATAGTGGAGTATGAAGGGGTGACATATGTGACAGTGAGAGGAGCTGGTCACTTGGTGGCTCTCAACAAACCCAGTGAGGCTCTCTCCCTTATTCATTCTTTCCTAACCGGCGACCATCTCCCTACTCGTCGATAA 1437 0.4099 MNLFLCLRSLCFFLLTTSFIKASEINVENYESDRIIHLPGQPSNPSVSQFSGYVTVNEAHGRALFYWFFEAQSEPSKKPLLLWLNGGPGCSSIGYGAVVEIGPLLVNKNGEGLHFNNYSWNQEANLLFVESPVGVGFSYTNTSSDLTKLEDNFVAEDAYNFLVNWLQRFPQFKSRDFYIAGESYAGHYIPQLAELVFDRNKDRSKYPFINFKGFIAGNPETEDYYDYKGLLEYAWSHAVISDQQYDKAKQVCDFKQFNWSNECNQVMNEVFQDYSEIDIYNIYAPACHLNSTSSMANDINSNGPESLTKVRNDYRIKRMRIFGGYDPCYSTYAQEYFNRLDVQSSLHANTKRANTKFTWNVCNNSILRTYNFSVFSVLPIYTKLIKGGLQIWIFSGDADGRVPVIGTRYCVEALGLPLKSSWRSWYHDDQVGGRIVEYEGVTYVTVRGAGHLVALNKPSEALSLIHSFLTGDHLPTRR 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1606g00020 478 FunFam Carboxypeptidase 325 474 - -
Gabi1606g00020 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 441 454 IPR001563 GO:0004185|GO:0006508
Gabi1606g00020 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Gabi1606g00020 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Gabi1606g00020 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Gabi1606g00020 478 FunFam Carboxypeptidase 29 289 - -
Gabi1606g00020 478 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 458 IPR001563 GO:0004185|GO:0006508
Gabi1606g00020 478 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Gabi1606g00020 478 SUPERFAMILY alpha/beta-Hydrolases 31 475 IPR029058 -
Gabi1606g00020 478 Gene3D - 377 471 - -
Gabi1606g00020 478 Pfam Serine carboxypeptidase 39 470 IPR001563 GO:0004185|GO:0006508
Gabi1606g00020 478 FunFam Carboxypeptidase 377 471 - -
Gabi1606g00020 478 Gene3D - 328 366 - -
Gabi1606g00020 478 Gene3D alpha/beta hydrolase 29 289 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1606g00020 Gabi-Chr1606 189600 192990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1606g00020 329 474 Calmodulin-binding Proteins AT2G22960 28.571 4.48e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1606g00020 K16297 - gmx:100815141 872.463