Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1606g00005 ATGCACAGAGGAGAACGCTACGGCAACAACAATAACAATGACTCTCACAACAACTATCGTCACTCGAGGGGACACTCTCACTCTCGCTTCTCCGATTCTCCCGTGAGCAACTACGACTCTCGTCGAAGCCCCGGTAGCTTCCGCTCCGGCGGTGCACCTCACCACCGCGCCTTTGATAGCCCCCCGCGTTGGTCTCCCGGTAGGGTGGGAGGGTTCCGGTCAATCGGCGGCGGCGACGGGTTCAGGCCAATGGGTGGTGAGGGTCCCGGAGAATTCGGATTCAACAGTCACCAGGCACCGCCGCTGTCTGGTCAGAAACGAGGGTTTCCTTTCCCTGGTCGTGGAGGCTCGCCGGATCATTTTGATGGTGGAAATTTTGCCAAACTTTTTGTTGGATCTGTTCCCCGGACAGCCACTGAAGAAGATATTCGCCCTTTATTTGAGGAACATGGGAATGTTATTGAGGTTGCCCTGATCAAAGATAGAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGGAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGGTATGCTGATGGTGAACGGGAACGCCTGGGTGCAGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACAGTAAAGGAAGTTGAGGAAATTTTCTCAGAATACGGGCGGGTCGAAGATGTGTATCTTATGCGTGATGAGAAGAAGCAAAGCCGTGGATGTGGTTTTGTTAAATACTCGCATAGAGATATGGCACTGGCGGCTATTAATGCACTTAATGGAATCTATACAATGAGAGGTTGTGAACAACCACTAATTGTCCGGTTTGCTGATCCCAAGAGACCTCGTCAAGGAGAATCCAGGGGTCCTGCATTTGGAGGTCCAGGATTTGGTCCTAGATTTGATGCACCTGGGACAAAACTTCCATCCCATTTTAGCGATCCTATGGGTGACCGTATGCTTCCCCCAAATGCTTGGCGTCCAATGCATCCACCAAATATGGGGCCATCCTCTAATGCTGGTCTTCATGGCATGGGGCCCCCGTTGCTTCCAAGATCTGGTGACATGGCATTGTCTATAAATGCGGGTGGTCCTATGTCTGGCATGGGAGGCCCCATAGATGGTCGTTATCAAGTTCAGTCTCTGTCATCAATGTCACAACAGAATTTCAACCAGCCTATACCTCAAATTCCACCTGTCAATCAACAGATATCACCATCACAGAAACCTATTCAATCATCTCAGGAGTTGCCAACTACCCACCGCTTGTACCCACAAGCTCCGATGCCCTACCCACAAATGTCAACCCTTTCATCTCTTAGGCAGCATGGCCAGCCGCAACTTTCTCTATCTGCTGGTCCTCTTCCATCACAGCAGGTACACGGCGTAAGTGGACAATATTCAACATCTCAGCCTCAAACTCAGCAGAGTGCTTTCTCTGCTGCAATTCCTCAGAACCGTCTTGATACCAGTATGCAATCTAATACAGCATTGGCTACTCCAAATCAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGATGTTGTCACAACAAACACAGACTTTACAAGCAAGCTTTAATTCATCTCAGCAAGCCTTTTCCCAGCTTCAACAACAATTACAGATGATGCAACCATCCAGTCAAGCATTAACATTGCAGCAAAATGCAGAAGCTACTAAAAAGCAGTCACAATGGGCTGGTACTGTAGCACAGGCGGTGGCCAGCACTCATGTGGCAGCCCCTGCTGCAGTTGTCCCTTCATCCACATCTGTTACTTCTGCCTTAACAGCAATAAGCCAGAACGTAGCTGTTGCAAAATGTAATTGGACAGAGCATATATCTCCCGAGGGCTTCAAGTACTACTACAATAGTGTCACTGGAGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACATCATCTGAACAGCAAAGACCATCTGTTCAGCAGTCTCAAACTCAGTCACAACCTTCAACACTATCCACCCAGCAAGTTCCACAGTTCCAACAGGTTCAGCCTCAAAGTCATCTCCAAGGACAGGTTCTACACCAGCAACAAATACACCAGCCTTCTTTGTCTTCTTCGTTCCAGGCATATGGAATTACAGGTCATCAAAATGTTCAGGAAGTTGGTTATAAACAATTACAGGCATCCGTTTTTTCTGCTGGTGATCCTGGACGCTACTCTCAGGGTATTCATACTACACACGAGATGATGTGGAAAAATAAACCTGCAGGAGTTTGA 2340 0.4816 MHRGERYGNNNNNDSHNNYRHSRGHSHSRFSDSPVSNYDSRRSPGSFRSGGAPHHRAFDSPPRWSPGRVGGFRSIGGGDGFRPMGGEGPGEFGFNSHQAPPLSGQKRGFPFPGRGGSPDHFDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSGEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSEYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGESRGPAFGGPGFGPRFDAPGTKLPSHFSDPMGDRMLPPNAWRPMHPPNMGPSSNAGLHGMGPPLLPRSGDMALSINAGGPMSGMGGPIDGRYQVQSLSSMSQQNFNQPIPQIPPVNQQISPSQKPIQSSQELPTTHRLYPQAPMPYPQMSTLSSLRQHGQPQLSLSAGPLPSQQVHGVSGQYSTSQPQTQQSAFSAAIPQNRLDTSMQSNTALATPNQQQVPPSVQQQPLQPLQQSPSQLAQMLSQQTQTLQASFNSSQQAFSQLQQQLQMMQPSSQALTLQQNAEATKKQSQWAGTVAQAVASTHVAAPAAVVPSSTSVTSALTAISQNVAVAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTSSEQQRPSVQQSQTQSQPSTLSTQQVPQFQQVQPQSHLQGQVLHQQQIHQPSLSSSFQAYGITGHQNVQEVGYKQLQASVFSAGDPGRYSQGIHTTHEMMWKNKPAGV 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1606g00005 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 208 IPR000504 GO:0003723
Gabi1606g00005 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 287 IPR000504 GO:0003723
Gabi1606g00005 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 192 IPR000504 GO:0003723
Gabi1606g00005 779 MobiDBLite consensus disorder prediction 1 118 - -
Gabi1606g00005 779 Pfam WW domain 641 667 IPR001202 GO:0005515
Gabi1606g00005 779 MobiDBLite consensus disorder prediction 665 715 - -
Gabi1606g00005 779 Gene3D - 124 214 IPR012677 -
Gabi1606g00005 779 MobiDBLite consensus disorder prediction 29 44 - -
Gabi1606g00005 779 ProSitePatterns WW/rsp5/WWP domain signature. 642 667 IPR001202 GO:0005515
Gabi1606g00005 779 FunFam flowering time control protein FCA isoform X2 121 213 - -
Gabi1606g00005 779 SMART ww_5 637 669 IPR001202 GO:0005515
Gabi1606g00005 779 SUPERFAMILY RNA-binding domain, RBD 218 319 IPR035979 GO:0003676
Gabi1606g00005 779 CDD WW 639 669 IPR001202 GO:0005515
Gabi1606g00005 779 MobiDBLite consensus disorder prediction 402 440 - -
Gabi1606g00005 779 MobiDBLite consensus disorder prediction 402 499 - -
Gabi1606g00005 779 Gene3D - 215 306 IPR012677 -
Gabi1606g00005 779 SUPERFAMILY WW domain 641 672 IPR036020 GO:0005515
Gabi1606g00005 779 SUPERFAMILY RNA-binding domain, RBD 111 212 IPR035979 GO:0003676
Gabi1606g00005 779 MobiDBLite consensus disorder prediction 298 337 - -
Gabi1606g00005 779 MobiDBLite consensus disorder prediction 450 499 - -
Gabi1606g00005 779 MobiDBLite consensus disorder prediction 673 715 - -
Gabi1606g00005 779 FunFam Flowering time control protein FCA 214 304 - -
Gabi1606g00005 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 298 IPR000504 GO:0003723
Gabi1606g00005 779 ProSiteProfiles WW/rsp5/WWP domain profile. 642 669 IPR001202 GO:0005515
Gabi1606g00005 779 PANTHER RNA BINDING PROTEIN 46 578 - -
Gabi1606g00005 779 SMART rrm1_1 128 204 IPR000504 GO:0003723
Gabi1606g00005 779 SMART rrm1_1 219 294 IPR000504 GO:0003723
Gabi1606g00005 779 Gene3D - 636 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1606g00005 Gabi-Chr1606 62578 74188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1606g00005 126 304 Eukaryotic Initiation Factors Gene Family AT1G71770 25.641 1.79e-13 72.4