Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1606g00004 ATGCACAGAGGAGAACGCTACGGCAACAACAATAACAATGACTCTCACAACAACTATCGTCACTCGAGGGGACACTCTCACTCTCGCTTCTCCGATTCTCCCGTGAGCAACTACGACTCTCGTCGAAGCCCCGGTAGCTTCCGCTCCGGCGGTGCACCTCACCACCGCGCCTTTGATAGCCCCCCGCGTTGGTCTCCCGGTAGGGTGGGAGGGTTCCGGTCAATCGGCGGCGGCGACGGGTTCAGGCCAATGGGTGGTGAGGGTCCCGGAGAATTCGGATTCAACAGTCACCAGGCACCGCCGCTGTCTGGTCAGAAACGAGGGTTTCCTTTCCCTGGTCGTGGAGGCTCGCCGGATCATTTTGATGGTGGAAATTTTGCCAAACTTTTTGTTGGATCTGTTCCCCGGACAGCCACTGAAGAAGATATTCGCCCTTTATTTGAGGAACATGGGAATGTTATTGAGGTTGCCCTGATCAAAGATAGAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGGAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGGTATGCTGATGGTGAACGGGAACGCCTGGGTGCAGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACAGTAAAGGAAGTTGAGGAAATTTTCTCAGAATACGGGCGGGTCGAAGATGTGTATCTTATGCGTGATGAGAAGAAGCAAAGCCGTGGATGTGGTTTTGTTAAATACTCGCATAGAGATATGGCACTGGCGGCTATTAATGCACTTAATGGAATCTATACAATGAGAGGTTGTGAACAACCACTAATTGTCCGGTTTGCTGATCCCAAGAGACCTCGTCAAGGAGAATCCAGGGGTCCTGCATTTGGAGGTCCAGGATTTGGTCCTAGATTTGATGCACCTGGGACAAAACTTCCATCCCATTTTAGCGATCCTATGGGTGACCGTATGCTTCCCCCAAATGCTTGGCGTCCAATGCATCCACCAAATATGGGGCCATCCTCTAATGCTGGTCTTCATGGCATGGGGCCCCCGTTGCTTCCAAGATCTGGTGACATGGCATTGTCTATAAATGCGGGTGGTCCTATGTCTGGCATGGGAGGCCCCATAGATGGTCGTTATCAAGTTCAGTCTCTGTCATCAATGTCACAACAGATATCACCATCACAGAAACCTATTCAATCATCTCAGGAGTTGCCAACTACCCACCGCTTGTACCCACAAGCTCCGATGCCCTACCCACAAATGTCAACCCTTTCATCTCTTAGGCAGCATGGCCAGCCGCAACTTTCTCTATCTGCTGGTCCTCTTCCATCACAGCAGGTACACGGCGTAAGTGGACAATATTCAACATCTCAGCCTCAAACTCAGCAGAGTGCTTTCTCTGCTGCAATTCCTCAGAACCGTCTTGATACCAGTATGCAATCTAATACAGCATTGGCTACTCCAAATCAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGATGTTGTCACAACAAACACAGACTTTACAAGCAAGCTTTAATTCATCTCAGCAAGCCTTTTCCCAGCTTCAACAACAATTACAGATGATGCAACCATCCAGTCAAGCATTAACATTGCAGCAAAATGCAGAAGCTACTAAAAAGCAGTCACAATGGGCTGGTACTGTAGCACAGGCGGTGGCCAGCACTCATGTGGCAGCCCCTGCTGCAGTTGTCCCTTCATCCACATCTGTTACTTCTGCCTTAACAGCAATAAGCCAGAACGTAGCTGTTGCAAAATGTAATTGGACAGAGCATATATCTCCCGAGGGCTTCAAGTACTACTACAATAGTGTCACTGGAGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACATCATCTGAACAGCAAAGACCATCTGTTCAGCAGTCTCAAACTCAGTCACAACCTTCAACACTATCCACCCAGCAAGTTCCACAGTTCCAACAGGTTCAGCCTCAAAGTCATCTCCAAGGACAGGTTCTACACCAGCAACAAATACACCAGCCTTCTTTGTCTTCTTCGTTCCAGGCATATGGAATTACAGGTCATCAAAATGTTCAGGAAGTTGGTTATAAACAATTACAGGCATCCGTTTTTTCTGCTGGTGATCCTGGACGCTACTCTCAGGGTATTCATACTACACACGAGATGATGTGGAAAAATAAACCTGCAGGAGTTTGA 2295 0.4832 MHRGERYGNNNNNDSHNNYRHSRGHSHSRFSDSPVSNYDSRRSPGSFRSGGAPHHRAFDSPPRWSPGRVGGFRSIGGGDGFRPMGGEGPGEFGFNSHQAPPLSGQKRGFPFPGRGGSPDHFDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSGEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSEYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGESRGPAFGGPGFGPRFDAPGTKLPSHFSDPMGDRMLPPNAWRPMHPPNMGPSSNAGLHGMGPPLLPRSGDMALSINAGGPMSGMGGPIDGRYQVQSLSSMSQQISPSQKPIQSSQELPTTHRLYPQAPMPYPQMSTLSSLRQHGQPQLSLSAGPLPSQQVHGVSGQYSTSQPQTQQSAFSAAIPQNRLDTSMQSNTALATPNQQQVPPSVQQQPLQPLQQSPSQLAQMLSQQTQTLQASFNSSQQAFSQLQQQLQMMQPSSQALTLQQNAEATKKQSQWAGTVAQAVASTHVAAPAAVVPSSTSVTSALTAISQNVAVAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTSSEQQRPSVQQSQTQSQPSTLSTQQVPQFQQVQPQSHLQGQVLHQQQIHQPSLSSSFQAYGITGHQNVQEVGYKQLQASVFSAGDPGRYSQGIHTTHEMMWKNKPAGV 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1606g00004 764 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 208 IPR000504 GO:0003723
Gabi1606g00004 764 Gene3D - 124 214 IPR012677 -
Gabi1606g00004 764 FunFam flowering time control protein FCA isoform X2 121 213 - -
Gabi1606g00004 764 MobiDBLite consensus disorder prediction 1 118 - -
Gabi1606g00004 764 CDD WW 624 654 IPR001202 GO:0005515
Gabi1606g00004 764 MobiDBLite consensus disorder prediction 298 338 - -
Gabi1606g00004 764 Pfam WW domain 626 652 IPR001202 GO:0005515
Gabi1606g00004 764 SUPERFAMILY RNA-binding domain, RBD 111 212 IPR035979 GO:0003676
Gabi1606g00004 764 MobiDBLite consensus disorder prediction 29 44 - -
Gabi1606g00004 764 MobiDBLite consensus disorder prediction 401 484 - -
Gabi1606g00004 764 Gene3D - 621 668 - -
Gabi1606g00004 764 FunFam Flowering time control protein FCA 214 304 - -
Gabi1606g00004 764 MobiDBLite consensus disorder prediction 650 701 - -
Gabi1606g00004 764 ProSitePatterns WW/rsp5/WWP domain signature. 627 652 IPR001202 GO:0005515
Gabi1606g00004 764 ProSiteProfiles WW/rsp5/WWP domain profile. 627 654 IPR001202 GO:0005515
Gabi1606g00004 764 MobiDBLite consensus disorder prediction 435 484 - -
Gabi1606g00004 764 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 287 IPR000504 GO:0003723
Gabi1606g00004 764 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 192 IPR000504 GO:0003723
Gabi1606g00004 764 PANTHER RNA BINDING PROTEIN 46 565 - -
Gabi1606g00004 764 MobiDBLite consensus disorder prediction 401 425 - -
Gabi1606g00004 764 SMART ww_5 622 654 IPR001202 GO:0005515
Gabi1606g00004 764 SUPERFAMILY RNA-binding domain, RBD 218 319 IPR035979 GO:0003676
Gabi1606g00004 764 MobiDBLite consensus disorder prediction 658 701 - -
Gabi1606g00004 764 Gene3D - 215 306 IPR012677 -
Gabi1606g00004 764 SUPERFAMILY WW domain 626 657 IPR036020 GO:0005515
Gabi1606g00004 764 MobiDBLite consensus disorder prediction 501 524 - -
Gabi1606g00004 764 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 298 IPR000504 GO:0003723
Gabi1606g00004 764 SMART rrm1_1 128 204 IPR000504 GO:0003723
Gabi1606g00004 764 SMART rrm1_1 219 294 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1606g00004 Gabi-Chr1606 62578 74188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1606g00004 126 304 Eukaryotic Initiation Factors Gene Family AT1G71770 25.641 2.03e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1606g00004 - - gmx:100798390 993.801