Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1606g00002 ATGGAGGACAAGAGAGAGAACACATCCACCATGGCAAATTCTCTCGCATTTTCCGATGAGATTCTGAACATGTCCATGAACTCATCCACCACCTTCAATTTTCCTTTCTCATCATCATCATCATCATCACCAACTTTATCCAGCATCTTTGACGACTTGATGCTACCACCACCACCATCCTCATGTGATCAAAAAGCTTCCTCCTTTGGTGGCTTCGTGGGCTTGCTCGGTGACAATGATTTTGACCCTTCAATATTTGATTGGCTCCCCATCATCAACACCATCGATGACTCTGATGCTACTACCACCTTATTCCCCGCCGCAAAGTCACCACCCTCCGCCACCCAAATCAGCCACCCTCTCCCGTCGCCGGCCAGCTCCAATGTCCCCGACTGCTCCGAGGTGGTGAACACTCCGGCGACCCCTAACTCGTCGTCGATTTCGTCTTCGTCGAACGAAGCCGCCGTCGCCAGCAAAGCAGTGAATGGACATGAAGCAGAGGATGAGGACGGAGATGACGACGGAGATGCAGGCAAAGGAGACGACCAAGATCAAGACAAGACTAAGAAACAGCTGAAACCAAAAAAGAAGAACCAAAAGAAGCAAAAAGAAGCAAGGTTTGCGTTCATGACAAAAAGCGATGTGGATCATCTTGACGATGGCTATAGGTGGCGTAAGTACGGCCAAAAAGCTGTGAAAAACAGTCCTCATCCCAGGAGCTACTATCGTTGCACCACCGCTGGTTGCGGCGTCAAGAAGCGGGTTGAGCGATCCTCCGACGACACTTCCGTCGTTGTCACCACCTACGAAGGCCAACACAGCCACCCGTGTCCGGCCACGACACGTGCGGCTAGCCTCGGGTTAATGCATGATGCGGCTAGGTTCGGACCCACCAACGCGAATAGTGGTGCTGTTGGACTTGAATCTCCACACTTTGTGATGCCACAACAACACCAACAGTTTCAGCACCAGAATGTGCAGCAGCAAGCAGCATCTTTGTTATATAACTCGAACTCATCCACCCCAACTAATTTGAATGTTGCTACCTCTTCTGGTAATTATGTGAATTCGTCTTCGTTTAATGGCTTCCTTCAGAATCAAGAGAATCATCATGAGGGTTTTGTACCTTCTAGCGGGTTGAAGGATCATCAGGCTTTTTTAAGGGACAATGGGCTTCTTCAGGACATTGTGCATATGTCGATGTTGAACGAGAAGATGGGAGATAATTAA 1230 0.4919 MEDKRENTSTMANSLAFSDEILNMSMNSSTTFNFPFSSSSSSSPTLSSIFDDLMLPPPPSSCDQKASSFGGFVGLLGDNDFDPSIFDWLPIINTIDDSDATTTLFPAAKSPPSATQISHPLPSPASSNVPDCSEVVNTPATPNSSSISSSSNEAAVASKAVNGHEAEDEDGDDDGDAGKGDDQDQDKTKKQLKPKKKNQKKQKEARFAFMTKSDVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTAGCGVKKRVERSSDDTSVVVTTYEGQHSHPCPATTRAASLGLMHDAARFGPTNANSGAVGLESPHFVMPQQHQQFQHQNVQQQAASLLYNSNSSTPTNLNVATSSGNYVNSSSFNGFLQNQENHHEGFVPSSGLKDHQAFLRDNGLLQDIVHMSMLNEKMGDN 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1606g00002 409 FunFam WRKY transcription factor 57 204 278 - -
Gabi1606g00002 409 Pfam WRKY DNA -binding domain 219 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1606g00002 409 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 128 328 IPR044810 GO:0003700
Gabi1606g00002 409 MobiDBLite consensus disorder prediction 103 157 - -
Gabi1606g00002 409 MobiDBLite consensus disorder prediction 103 205 - -
Gabi1606g00002 409 SUPERFAMILY WRKY DNA-binding domain 210 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi1606g00002 409 Gene3D WRKY domain 202 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi1606g00002 409 ProSiteProfiles WRKY domain profile. 213 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1606g00002 409 SMART WRKY_cls 218 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1606g00002 Gabi-Chr1606 53969 56073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1606g00002 188 397 WRKY Transcription Factor Family AT5G49520 53.052 6.56e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi1606g00002 WRKY 4.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1606g00002 - - gmx:100808190 354.369